|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sopim09g057870.0.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
Family |
FAR1 |
Protein Properties |
Length: 170aa MW: 19108.8 Da PI: 9.208 |
Description |
FAR1 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim09g057870.0.1 | genome | CSHL | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | FAR1 | 85.9 | 6.2e-27 | 62 | 148 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
+Y++YA+++GF +r+++ ++s rnge ++r++vC+keg++++++++ + +++ r gCka++ vkke++gkw v+kl++eHnHel+
Sopim09g057870.0.1 62 YYSTYATHLGFIMRVDAFRRSMRNGELVWRRLVCNKEGFSKSRQSQ--NGKKKCRAIREGCKAMIIVKKEQSGKWLVAKLVKEHNHELV 148
8*****************************************9988..888888899******************************96 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 170 aa
Download sequence Send
to blast |
MVQTSSPKEF TTNQDNATDD VGIVETSTEK EFTPNGLEVE GRSNMEPYVG MEFESEEAAK 60 AYYSTYATHL GFIMRVDAFR RSMRNGELVW RRLVCNKEGF SKSRQSQNGK KKCRAIREGC 120 KAMIIVKKEQ SGKWLVAKLV KEHNHELVVK PVNTPKGAIL CQTPVIQGF*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |