PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g057710.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 475aa    MW: 52192.3 Da    PI: 7.5521
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g057710.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43e-09298345455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sopim09g057710.0.1 298 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 345
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.24E-17292361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-10292349No hitNo description
PROSITE profilePS5088815.663294344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16294360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6298345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10300350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MEKDYFINGG IPNPALQFEP TMSFPSWNPL HSGQSLFNPN WDHSTPQFDS TLNSIVSSSP  60
AELIGKLGTV CSSPQPILHN NSYSRPMMGK DNIPNLGSSL PPPLPADPGF AQRAAKFSCF  120
GSRSFNGRTS PLGLNYTELS HRSAQTLGNG KLPRVSSSPS LKQGGSPLQL KNSGQTRMEM  180
MSNNSNESVS EPSGETASKL PTELNSSSRK RKTVSRGKTK EDSPTEGVNG NRGSEADDNA  240
RAKRCKQVES NGIENGRVHM EESKDDETQK QVMEYQKPTE PPKDYIHVRA RRGQATDSHS  300
LAERVRREKI SERMKLLQDL VPGCNKVTGK ALMLDEIINY VQSLQRQVEF LSMKLATVNP  360
NLDFPLSKDI CQPNGSVAHP VFPIDKTSSS YQQGRSDIPN GALSQCSVDT SDNSLCRSLG  420
MQLPPLDGFA EYLNQFPEDD LQSFVQMGFT QNPNKDMTLQ SQGPHQTSHM KIEM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207212SRKRKT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247047.10.0transcription factor bHLH62-like isoform X1
TrEMBLA0A3Q7I2610.0A0A3Q7I261_SOLLC; Uncharacterized protein
STRINGSolyc09g057710.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-87bHLH family protein