PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim09g057710.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 475aa MW: 52192.3 Da PI: 7.5521 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.4 | 3e-09 | 298 | 345 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Sopim09g057710.0.1 298 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 345 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.24E-17 | 292 | 361 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.61E-10 | 292 | 349 | No hit | No description |
PROSITE profile | PS50888 | 15.663 | 294 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-16 | 294 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-6 | 298 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-10 | 300 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MEKDYFINGG IPNPALQFEP TMSFPSWNPL HSGQSLFNPN WDHSTPQFDS TLNSIVSSSP 60 AELIGKLGTV CSSPQPILHN NSYSRPMMGK DNIPNLGSSL PPPLPADPGF AQRAAKFSCF 120 GSRSFNGRTS PLGLNYTELS HRSAQTLGNG KLPRVSSSPS LKQGGSPLQL KNSGQTRMEM 180 MSNNSNESVS EPSGETASKL PTELNSSSRK RKTVSRGKTK EDSPTEGVNG NRGSEADDNA 240 RAKRCKQVES NGIENGRVHM EESKDDETQK QVMEYQKPTE PPKDYIHVRA RRGQATDSHS 300 LAERVRREKI SERMKLLQDL VPGCNKVTGK ALMLDEIINY VQSLQRQVEF LSMKLATVNP 360 NLDFPLSKDI CQPNGSVAHP VFPIDKTSSS YQQGRSDIPN GALSQCSVDT SDNSLCRSLG 420 MQLPPLDGFA EYLNQFPEDD LQSFVQMGFT QNPNKDMTLQ SQGPHQTSHM KIEM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 207 | 212 | SRKRKT |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00660 | PBM | Transfer from Pp3c6_9520 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004247047.1 | 0.0 | transcription factor bHLH62-like isoform X1 | ||||
TrEMBL | A0A3Q7I261 | 0.0 | A0A3Q7I261_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g057710.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1057 | 23 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 1e-87 | bHLH family protein |