PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g018130.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 188aa    MW: 21143.9 Da    PI: 7.7261
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g018130.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.1e-08102147554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h   Er+R ++i   fe+Lr l+P+     s K +  +i  kAv++I +L
  Sopim09g018130.0.1 102 HISTERKRTKKIWILFETLRALIPNI----SAKADECTIIDKAVNHILKL 147
                         7789*********************6....69***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.86597147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-12100160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-10101160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-7102149No hitNo description
PfamPF000101.2E-5102147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-4103153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MNGGGESNHV FSWEIDDVLS YLNLNDNQIG SGTTFEGDMM TNPIRFDTYQ SLTVVNEVVE  60
SSTNVAKKRS PPNLKKNGKG IVEPKSSVDG VRDKGSLEHE IHISTERKRT KKIWILFETL  120
RALIPNISAK ADECTIIDKA VNHILKLKNT FEKLKRENLE GFQEHNIRLI SSQKFPDVGN  180
SWEKLFG*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004228808.31e-105transcription factor bHLH95-like
TrEMBLA0A3Q7EBD91e-104A0A3Q7EBD9_SOLLC; Uncharacterized protein
STRINGSolyc09g018130.1.11e-135(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2919222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.19e-15bHLH family protein