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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim09g015770.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 292aa MW: 33249.6 Da PI: 5.6123 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim09g015770.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 74.5 | 1.3e-23 | 109 | 170 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
+dDg++WrKYGqK++ +s++pr+Y+rCt++ +C++ k+v++ +++p+ + +tY g+H+++
Sopim09g015770.0.1 109 VDDGHAWRKYGQKQILNSTYPRHYFRCTHKydqKCQASKQVQKIQDNPQRFRTTYYGHHTCK 170
59***************************99999**************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway |
GO:0009864 | Biological Process | induced systemic resistance, jasmonic acid mediated signaling pathway |
GO:0010200 | Biological Process | response to chitin |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0050832 | Biological Process | defense response to fungus |
GO:1900056 | Biological Process | negative regulation of leaf senescence |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 292 aa
Download sequence Send
to blast |
MDNSSSDLNR AIEGLIRGRE FTRRLKQIIK ISGGEVENIM AEDLVAKILD SFSETLSVIN 60 NSDVVVATAV EVKSPEDYSS GSCKSSDRRG CYKRRKTSES DIKESSDLVD DGHAWRKYGQ 120 KQILNSTYPR HYFRCTHKYD QKCQASKQVQ KIQDNPQRFR TTYYGHHTCK AFPRVSQIIL 180 DSQIDGNSNY ISFDQNHTFP SIKQETKEEV VFRFYPKIED QIQSSSSDYF LPNDHDHDHL 240 TPATFEASGS RMTSPDVISS GVYSSCTTTS NNDNLEIDID FEEGLWNFDQ V*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250|UniProtKB:Q9LY00, ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:21898085}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269|PubMed:21898085}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HQ706095 | 0.0 | HQ706095.1 Solanum lycopersicum WRKY3 (WRKY3) mRNA, complete cds. |