 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim09g014700.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
LBD |
| Protein Properties |
Length: 175aa MW: 19893.5 Da PI: 8.4696 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim09g014700.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 98.3 | 7.6e-31 | 9 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleql 90
+CaaCk++r++C+++C+lap fp+++ ++f+nv +l+ +s+++++l+++ ++e++e+++++l+ eA++r ++PvyG++++ +kl+ q+e++
Sopim09g014700.0.1 9 KCAACKYQRKRCQENCPLAPFFPSNKFEDFKNVSRLYKVSTIIEMLNSVaDTEKKEKMVETLILEAKIRSENPVYGSIAIQNKLKLQIEET 99
5***********************************************95556699*********************************** PP
DUF260 91 kaelallke 99
+e++l+k+
Sopim09g014700.0.1 100 MKEIDLVKK 108
****99986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 175 aa
Download sequence Send
to blast |
MNDAGARGKC AACKYQRKRC QENCPLAPFF PSNKFEDFKN VSRLYKVSTI IEMLNSVADT 60
EKKEKMVETL ILEAKIRSEN PVYGSIAIQN KLKLQIEETM KEIDLVKKTT DYFKELRKRA 120
FCPKKNEETS TSGTQSFQGH KSDSTLEKAT SITENHANQD VEKDRVHFND NDGT*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
