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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim09g011380.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TALE | ||||||||
Protein Properties | Length: 505aa MW: 55977.5 Da PI: 7.8888 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 1.9e-09 | 301 | 333 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LAk++gL+ +qV++WF N R + Sopim09g011380.0.1 301 HPYPTDTDKVMLAKQTGLSRNQVSNWFINARVR 333 89*****************************88 PP | |||||||
2 | BELL | 104.1 | 9.8e-34 | 173 | 241 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 + kkk++L+s+l+eV+++Ykqy+eqlq+v++sFe vaglg+a+p++++A k++S+hF+cLkdai++q+ Sopim09g011380.0.1 173 QFGKKKSRLISMLDEVYHKYKQYHEQLQMVVASFESVAGLGNAAPFANVAIKTMSKHFKCLKDAIIDQL 241 5679**************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.7E-43 | 118 | 239 | IPR006563 | POX domain |
Pfam | PF07526 | 3.1E-34 | 123 | 237 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.953 | 274 | 337 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.6E-10 | 277 | 341 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.48E-12 | 277 | 338 | No hit | No description |
SuperFamily | SSF46689 | 3.64E-17 | 279 | 343 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-27 | 280 | 341 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-18 | 294 | 333 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048457 | Biological Process | floral whorl morphogenesis | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MAEGFEPYHV PQQSRRDKLR VLLDENNNSN CQIPPLYDPS IVLSSDLSIF QEINGNPFLY 60 TSQIPRFLDH NNTNTNSNSN SNGQGNLSLS LSSLHNNDLS SSKSITTTTS CVPLGPFTGY 120 SSILKRSKFL KPAQILLDEL CHVTKGIYVD DSNDDASNLM MDTPQGFTNG EEQFGKKKSR 180 LISMLDEVYH KYKQYHEQLQ MVVASFESVA GLGNAAPFAN VAIKTMSKHF KCLKDAIIDQ 240 LQFTTRKSSH GQINCERGVG ISGKGIYCQR QETQPVWRPQ RGLPERAVTV LRAWLFDHFL 300 HPYPTDTDKV MLAKQTGLSR NQVSNWFINA RVRLWKPMVE EIHMLETREG HNKSSSHREG 360 PNNNNNNDSN NPIEHFPMSN SNACESNTPS TSTSRLQDLP SKRTRNELTN IPNNIGRIAD 420 SINLSYGNLS TGVGGGVSLT LGLHQNSGNI GLSEPFPMNA ARRFGIDSST SSGRVIFGGF 480 DEQNGQFGRN NSMVGGQFLH DFAG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 1e-15 | 283 | 340 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-15 | 283 | 340 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 1e-15 | 283 | 341 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 1e-15 | 283 | 341 | 1 | 59 | Homeobox protein Meis2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004246395.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
Swissprot | Q9LZM8 | 1e-107 | BLH9_ARATH; BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A3Q7I0A2 | 0.0 | A0A3Q7I0A2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g011380.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3520 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02030.1 | 3e-96 | TALE family protein |