PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g010670.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family E2F/DP
Protein Properties Length: 196aa    MW: 22223.2 Da    PI: 4.9004
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g010670.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP65.76.1e-212721671
             E2F_TDP 16 lleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71
                        +++k+e+ g++t++eva+e+++e               d+kn+rRR+YD lNVL+al++ie+ +++eirwkg
  Sopim09g010670.0.1  2 VCKKVEDkGRITYSEVADEIIAElmtmensssvplnesDEKNIRRRVYDSLNVLMALDVIER-DRKEIRWKG 72
                        89**9999******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013722.6E-16172IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.7E-17272IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.76E-14273IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.4E-30276IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011381.4E-3776193IPR014889Transcription factor DP, C-terminal
CDDcd144584.62E-2978180IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440748.37E-3680193No hitNo description
PfamPF087818.6E-3280192IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MVCKKVEDKG RITYSEVADE IIAELMTMEN SSSVPLNESD EKNIRRRVYD SLNVLMALDV  60
IERDRKEIRW KGLPNSDARD MEETKKGHAE LLAKIGKKAA YLKDLEEQLA SLQNLKLRNE  120
QSCKSTNGPS QGFSLPFILV QTAPHATVEV EISEDMQLVH FDFNSVPFSL HDDAYVLKLM  180
RNYELLESES VSRTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B9e-222791995PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755213e-73HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019071357.11e-143transcription factor-like protein DPA isoform X1
RefseqXP_019071358.11e-143transcription factor-like protein DPA isoform X3
SwissprotQ9FNY32e-76DPA_ARATH; Transcription factor-like protein DPA
TrEMBLA0A3Q7IU121e-141A0A3Q7IU12_SOLLC; Uncharacterized protein
STRINGSolyc09g010670.2.11e-142(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1488399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.37e-79Transcription factor DP