PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim09g010230.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 346aa MW: 39112.7 Da PI: 7.5906 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 106.2 | 1.6e-33 | 60 | 174 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f+k ltpsdv+k++rlv+pk++ae++ +g +e++ l++edesg+sW+++++y+++s++yvltkGW++Fvk+++L+ Sopim09g010230.0.1 60 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsgsnnsnsnnnniDGGTEKGLLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKEKRLD 150 99*******************************99999999955567999***************************************** PP TT-EEEEEE-SSSEE..EEEEE-S CS B3 76 egDfvvFkldgrsefelvvkvfrk 99 +gD+v+F ++++++ +l+++++r+ Sopim09g010230.0.1 151 AGDIVLFDRHRSDTDRLFIGWRRR 174 ********98889999******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-41 | 53 | 183 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-30 | 57 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.91E-27 | 58 | 164 | No hit | No description |
Pfam | PF02362 | 1.8E-30 | 60 | 175 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.438 | 60 | 175 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-28 | 60 | 175 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MSINHISSET FWWTKKQPPS FPNMFEFNLN NNMNNNSTNE DDELVQNEDK FEEIPRDHLF 60 EKPLTPSDVG KLNRLVIPKQ HAEKYFPLSG SNNSNSNNNN IDGGTEKGLL LSFEDESGKS 120 WRFRYSYWNS SQSYVLTKGW SRFVKEKRLD AGDIVLFDRH RSDTDRLFIG WRRRNIISAP 180 ISTAAVRHNT AAAMTGNIGG GGGGWAHVYY GGHPYPRAGA GLPYQPDCLH AGRGAMQNQT 240 TTSVNNNTRR HVRLFGVNLE CEADDSSWSE PPPTPDGGGS STSSHHQDHG RSQDQASQHY 300 YQYQFQYSKP HVAVSATASS YNNNHHNHKD MNFSRDVNQM RYHQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-50 | 56 | 174 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-50 | 56 | 174 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004246879.2 | 0.0 | B3 domain-containing protein At2g36080-like | ||||
Swissprot | Q8GYJ2 | 4e-67 | Y2608_ARATH; B3 domain-containing protein At2g36080 | ||||
TrEMBL | A0A3Q7ITT7 | 0.0 | A0A3Q7ITT7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g010230.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3801 | 24 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 2e-61 | B3 family protein |
Publications ? help Back to Top | |||
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