PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g008440.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 311aa    MW: 34951.9 Da    PI: 8.165
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g008440.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00032124146123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C++sF++   L  H  +H
  Sopim09g008440.0.1 124 YQCKTCNRSFPSFQALGGHRASH 146
                         9***********99999998887 PP
2zf-C2H213.10.00028209231123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  F++   L  H+r+H
  Sopim09g008440.0.1 209 HECSICGAEFNSGQALGGHMRRH 231
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.83E-8123146No hitNo description
PfamPF139128.6E-13123148IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.679124151IPR007087Zinc finger, C2H2
SMARTSM003550.03124146IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
SuperFamilySSF576678.83E-8204231No hitNo description
PfamPF139125.1E-13208232IPR007087Zinc finger, C2H2
PROSITE profilePS501579.577209231IPR007087Zinc finger, C2H2
SMARTSM003550.011209231IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280211231IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MIKIKKCYTM EVHDDRGCDQ DQQLNMVIKR RRTKRPRPPS PLTLGITTSS CSTVEGASSG  60
ELVDGHVANS LLRSNNCGGM IDDKIVRNTN QEEEDMANCL ILLAQGHNFQ KSSSLSQSPT  120
LDVYQCKTCN RSFPSFQALG GHRASHKKPK TLEDQIKNLK SNDHHHHQQA ENNIRLKLNN  180
NDDHVTTLSL QIPNNSNNNS NNKNKNRVHE CSICGAEFNS GQALGGHMRR HRPLPNSIAI  240
TSNHHIHEES HHHHHHDQQI IKNNTRAFLS LDLNLPAPED DHRPENSKFT FATKEQVIVF  300
SASSLVDCHY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13337KRPRP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246607.10.0zinc finger protein ZAT5
TrEMBLA0A3Q7HYQ70.0A0A3Q7HYQ7_SOLLC; Uncharacterized protein
STRINGSolyc09g008440.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.12e-48C2H2 family protein