PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim09g005070.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 149aa MW: 17432.8 Da PI: 6.3537

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim09g005070.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.1	4.3e-10	28	70	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ r RR+ri ++f L++l+P K++ +++Le+A++Y+k L Sopim09g005070.0.1 28 IAARERRHRISDRFKILQSLVPGG-----SKMDTVTMLEEAIHYVKFL 70 56799***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.193	21	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.37E-14	26	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.46E-12	27	74	No hit	No description
SMART	SM00353	2.0E-12	27	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-12	28	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-7	29	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MNSKEKKERV YSSAPKKVMK LSTDPQSIAA RERRHRISDR FKILQSLVPG GSKMDTVTML 60 EEAIHYVKFL KTQIWLHQTM VNLVDINHEM VGYYPLVDDD QNIHKNNISS MDYQQMQQVQ 120 SYDNDAFQQV EFPFEETNIS GDVFMYYN*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975521	0.0	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019250366.1	1e-48	PREDICTED: transcription factor bHLH140
Swissprot	Q9M041	2e-29	BH140_ARATH; Transcription factor bHLH140
TrEMBL	A0A3Q7HVI3	1e-107	A0A3Q7HVI3_SOLLC; Uncharacterized protein
STRING	Solyc09g005070.1.1	1e-107	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11714	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	9e-32	APRATAXIN-like

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]