PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim09g005030.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 147aa MW: 16633.9 Da PI: 7.6416

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim09g005030.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.5e-32	62	115	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rlrWtpeLH rFv+ave+LGG+++AtPk +l++m++kgL+++hvkSHLQ++R+ Sopim09g005030.0.1 62 ARLRWTPELHLRFVHAVERLGGQDRATPKLVLQMMNIKGLSIAHVKSHLQMFRS 115 79***************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.958	58	118	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-30	58	116	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.96E-16	61	117	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.0E-23	62	117	IPR006447	Myb domain, plants
Pfam	PF00249	2.8E-10	63	113	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MLEDSGETGC NSKTSCNFEN EVLEENDASS KFKDGGSSSE STLEESEKIK PCVRPYVRSK 60 MARLRWTPEL HLRFVHAVER LGGQDRATPK LVLQMMNIKG LSIAHVKSHL QMFRSKKTDD 120 QSQGIGHHHK LFMEGGDPNI FNMIQFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-19	62	117	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	62	117	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	62	117	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	62	117	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	1e-141	HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBank	HG975521	1e-141	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015087329.1	1e-106	putative two-component response regulator ARR21
TrEMBL	M1CJ60	3e-88	M1CJ60_SOLTU; Uncharacterized protein
STRING	Solyc09g005030.1.1	1e-100	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4382	21	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	3e-47	G2-like family protein