PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g082110.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 340aa    MW: 38573.7 Da    PI: 5.3966
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g082110.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.6e-30118178259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++dp ++eitY+g+H+++
  Sopim08g082110.0.1 118 DDGYSWRKYGQKDILGAKYPRSYYRCTYRlmqNCWATKQVQRSDDDPALFEITYKGTHTCN 178
                         8***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-28108179IPR003657WRKY domain
PROSITE profilePS5081121.494112180IPR003657WRKY domain
SuperFamilySSF1182905.1E-26116179IPR003657WRKY domain
SMARTSM007748.9E-41117179IPR003657WRKY domain
PfamPF031062.7E-27118177IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDCGFNYEYN SLINELTQGL EHVKQLRASN KIQELDFHLQ MILSSFEKSL SILNWSTSGL  60
ATQTPLLVAP PESSISVDEN PKSDDQDFIY VSKKRKQMPT WSEQVRVSSE NGYEGPTDDG  120
YSWRKYGQKD ILGAKYPRSY YRCTYRLMQN CWATKQVQRS DDDPALFEIT YKGTHTCNQT  180
YNCAAATQPK SPQKHKHKKQ ANNSRTTPSN QMLANLQANL RVNTDDLDKK EATCSFPFSP  240
TFSGFVDENL HFQMSQVDDS LVGGYSPSFV SPTTPESSYF SLPTCQMNDS RRMYNAYHSE  300
SDLPDLFSAN TSSTSSPIIG LEFPLEHVEL DPNFSDFFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19118177968OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092950.0AP009295.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08SLe0011M12, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245530.10.0probable WRKY transcription factor 53
TrEMBLA0A3Q7HUS30.0A0A3Q7HUS3_SOLLC; Uncharacterized protein
STRINGSolyc08g082110.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-59WRKY family protein