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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim08g082110.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 340aa MW: 38573.7 Da PI: 5.3966 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim08g082110.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 95.2 | 4.6e-30 | 118 | 178 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
dDgy+WrKYGqK++ g+++prsYYrCt++ +C+++k+v+rs++dp ++eitY+g+H+++
Sopim08g082110.0.1 118 DDGYSWRKYGQKDILGAKYPRSYYRCTYRlmqNCWATKQVQRSDDDPALFEITYKGTHTCN 178
8***************************9999***************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MDCGFNYEYN SLINELTQGL EHVKQLRASN KIQELDFHLQ MILSSFEKSL SILNWSTSGL 60 ATQTPLLVAP PESSISVDEN PKSDDQDFIY VSKKRKQMPT WSEQVRVSSE NGYEGPTDDG 120 YSWRKYGQKD ILGAKYPRSY YRCTYRLMQN CWATKQVQRS DDDPALFEIT YKGTHTCNQT 180 YNCAAATQPK SPQKHKHKKQ ANNSRTTPSN QMLANLQANL RVNTDDLDKK EATCSFPFSP 240 TFSGFVDENL HFQMSQVDDS LVGGYSPSFV SPTTPESSYF SLPTCQMNDS RRMYNAYHSE 300 SDLPDLFSAN TSSTSSPIIG LEFPLEHVEL DPNFSDFFR*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP009295 | 0.0 | AP009295.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08SLe0011M12, complete sequence. |
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |