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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim08g081610.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 304aa MW: 34690.6 Da PI: 5.4533 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim08g081610.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 89.6 | 2.5e-28 | 127 | 185 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D+++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ve+s +++ ++++tY+ eHnh+
Sopim08g081610.0.1 127 SDKWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVEQSCTENGTFIVTYTAEHNHS 185
79*************************998****************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010200 | Biological Process | response to chitin |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 304 aa
Download sequence Send
to blast |
MDWGLQAVVI GSSSSYSANN IDFSPKLDFQ ESDHQYLSFS HEMKKEFFIS DELEELYKPF 60 YHVDGGQNML MGSSISLIPK EIIKEEKREE EQQQVVAPTS TYVPKYKKRK NEQKRVVLQL 120 KADDLSSDKW AWRKYGQKPI KGSPYPRSYY RCSSSKGCLA RKQVEQSCTE NGTFIVTYTA 180 EHNHSQPTRR NSLAGTIKSK FPNSKNTNIK KNIVKDEKIS SPHGSTSNNN LGFSPETLMI 240 DEFQEIEMND HEEIKNMFEG SDENECVSIQ EMFDGDFFAG LEDIHDGFTS SFGCNNSTFP 300 FSF*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |