PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g079100.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | YABBY | ||||||||
Protein Properties | Length: 217aa MW: 24172.2 Da PI: 7.6678 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 220.9 | 3.8e-68 | 17 | 179 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkeelleelkveeenlksnvekeesasts 95 seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll l ++ + h s ++ll+e +++ n+ +n++++ ++ + Sopim08g079100.0.1 17 PSEQLCYVHCNVCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPGWLLPSTnHHHHHFGHTYFSPSHNLLDEISNATPNFLMNQSNSAHEFVQ 107 68***************************************95544433133333333333333347777777777777776666666666 PP YABBY 96 vsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ + +++pr+pp v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+i fgl Sopim08g079100.0.1 108 LPA----RPGFDDLPRPPPvVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIQFGL 179 655....55788999999989*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.1E-65 | 17 | 179 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.23E-8 | 120 | 173 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 6.6E-5 | 127 | 173 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MSSSNSLSLD HLPPPPPSEQ LCYVHCNVCD TVLAVSVPCT SLFKTVTVRC GHCTNLLPGW 60 LLPSTNHHHH HFGHTYFSPS HNLLDEISNA TPNFLMNQSN SAHEFVQLPA RPGFDDLPRP 120 PPVVNRPPEK RQRVPSAYNR FIKEEIQRIK AGNPDISHRE AFSAAAKNWA HFPHIQFGLM 180 PDQTVKRTNV RQQDGEDVLT KDGLFNTSAN VSVSPY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ667762 | 0.0 | KJ667762.1 Solanum virginianum YAB1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001353824.1 | 1e-161 | axial regulator YABBY1b | ||||
Swissprot | A2X7Q3 | 2e-78 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 2e-78 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A2I7ZG64 | 1e-159 | A0A2I7ZG64_9SOLN; YABBY3 | ||||
TrEMBL | A0A2I7ZG66 | 1e-159 | A0A2I7ZG66_SOLCE; YABBY3 | ||||
TrEMBL | A0A2I7ZG72 | 1e-159 | A0A2I7ZG72_SOLPI; YABBY3 | ||||
TrEMBL | K4CNR9 | 1e-159 | K4CNR9_SOLLC; YABBY3 | ||||
STRING | Solyc08g079100.2.1 | 1e-160 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00180.1 | 7e-70 | YABBY family protein |
Publications ? help Back to Top | |||
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