PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g077000.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 279aa MW: 31080.8 Da PI: 6.3359 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 81 | 103 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Sopim08g077000.0.1 81 YTCTFCRREFRSAQALGGHMNVH 103 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.22E-6 | 78 | 108 | No hit | No description |
Pfam | PF13912 | 2.2E-5 | 81 | 104 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.157 | 81 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0066 | 81 | 103 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MAAELGILSS TQLQKLAQSQ EQHSQQQLSS LQPPFNPDSV TDCWMWNAKQ ATQDDDDSWE 60 VRAFEEDTGN AMGTTWPPRS YTCTFCRREF RSAQALGGHM NVHRRDRARL HQAPPQYASN 120 SIHNHNHNHI SSQNSNSTFL VPTQEFVTNG GLCLLYSLPN PSNTHIFNNP TSRKSCTMNN 180 NSSSSSTLNL SISPYPTNNN LMSPTTPYPT PTSLNFPINK PNPRICNTSN DDDNNNNNHD 240 YGSNKRDSLI EDELDLELRL GWRSSSSTTT TTTTTSSP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 3e-13 | 76 | 103 | 2 | 29 | superman protein |
2l1o_A | 3e-13 | 76 | 103 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004246181.1 | 0.0 | zinc finger protein 10-like | ||||
TrEMBL | A0A3Q7IN29 | 0.0 | A0A3Q7IN29_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g077000.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5953 | 21 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 6e-35 | C2H2 family protein |