PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g076820.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 329aa MW: 36759.4 Da PI: 6.3186 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.8 | 4.5e-14 | 116 | 167 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A+e++k+L+ Sopim08g076820.0.1 116 QRMTHIAVERNRRKQMNEHLSVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 167 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-13 | 114 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.51E-12 | 114 | 171 | No hit | No description |
SuperFamily | SSF47459 | 3.93E-17 | 114 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.389 | 115 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-11 | 116 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-10 | 121 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MALEALSTNE LLNFIIYDTI STTTTTTNSN NNLDENALFF DNHEENNAFL LKPQDFCTTT 60 PLEQQYSIAA SVPRPESSRE KNNLSVAAQS GGGGGGRKKR RRRPKICKNK EEAENQRMTH 120 IAVERNRRKQ MNEHLSVLRS LMPESYVQRG DQASIVGGAI EFVKELEHIL QSLEAQKFVL 180 LQQQQEGGTS NDNDDCDGGK REVSKADYVG TPFAQFFSYP QYTCCELPNK YTSKSKAAIA 240 DIEVTLIETH ANVRILSRRR FRQLSKLVAA FQSLYISVLH LNVTTLDPLV LYSISVKVEE 300 GCQLNSADDI AGAVHHMLRI IEEEAATL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 102 | RKKRRRR |
2 | 97 | 102 | KKRRRR |
3 | 116 | 127 | RMTHIAVERNRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ261233 | 0.0 | GQ261233.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI018 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001265931.1 | 0.0 | Hop-interacting protein THI018 | ||||
Swissprot | Q56XR0 | 2e-74 | BH071_ARATH; Transcription factor bHLH71 | ||||
TrEMBL | G8Z255 | 0.0 | G8Z255_SOLLC; Hop-interacting protein THI018 | ||||
STRING | Solyc08g076820.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5632 | 24 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 1e-76 | bHLH family protein |
Publications ? help Back to Top | |||
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