PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g076820.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 329aa    MW: 36759.4 Da    PI: 6.3186
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g076820.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.5e-14116167155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Sopim08g076820.0.1 116 QRMTHIAVERNRRKQMNEHLSVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 167
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-13114169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-12114171No hitNo description
SuperFamilySSF474593.93E-17114186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.389115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-11116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-10121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MALEALSTNE LLNFIIYDTI STTTTTTNSN NNLDENALFF DNHEENNAFL LKPQDFCTTT  60
PLEQQYSIAA SVPRPESSRE KNNLSVAAQS GGGGGGRKKR RRRPKICKNK EEAENQRMTH  120
IAVERNRRKQ MNEHLSVLRS LMPESYVQRG DQASIVGGAI EFVKELEHIL QSLEAQKFVL  180
LQQQQEGGTS NDNDDCDGGK REVSKADYVG TPFAQFFSYP QYTCCELPNK YTSKSKAAIA  240
DIEVTLIETH ANVRILSRRR FRQLSKLVAA FQSLYISVLH LNVTTLDPLV LYSISVKVEE  300
GCQLNSADDI AGAVHHMLRI IEEEAATL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196102RKKRRRR
297102KKRRRR
3116127RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612330.0GQ261233.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI018 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001265931.10.0Hop-interacting protein THI018
SwissprotQ56XR02e-74BH071_ARATH; Transcription factor bHLH71
TrEMBLG8Z2550.0G8Z255_SOLLC; Hop-interacting protein THI018
STRINGSolyc08g076820.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-76bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]