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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim08g076100.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
bZIP |
Protein Properties |
Length: 410aa MW: 43557.9 Da PI: 7.4396 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim08g076100.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 67.4 | 2.4e-21 | 305 | 367 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L+ el++l+ e ++l s++
Sopim08g076100.0.1 305 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEENASLRAELSRLRSEHDQLASQN 367
89*********************************************************9997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 410 aa
Download sequence Send
to blast |
MGSSDIDKSS KEAKESKEAK TPNSQEQASS TATGTANPEW PGFQGYSPMP PHGFMASSPQ 60 AHPYMWGVQH LMPPYGTPPH PYVTMYPHGG IYAHPSIPPG SYPFSPFAMP SPNGVAEVAV 120 NTSSNTELDG KSSEVKEKLP IKRSKGSLGS LNMITGKNTE LGKTSGASAN GVYSKSAESG 180 SEGSSEGSDA NCQNESPMKS AGRQDSAEEA SQNGNSAHSS QNGGTSAPHS LVNQTMAIMP 240 MSAVGAGGIP GPTTNLNIGM DYWNAAASPN IPAIHGKVPS ASVAGGIVNA GSRDIVQSQM 300 WIQDERELKR QRRKQSNRES ARRSRLRKQA ECDELAQRAE VLKEENASLR AELSRLRSEH 360 DQLASQNASL KERLGEVSGR DDPRPSRNDI HLNKDTQHSS QTEPKQGGQ*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 321 | 327 | RRSRLRK |
2 | 321 | 328 | RRSRLRKQ |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT013980 | 0.0 | BT013980.1 Lycopersicon esculentum clone 133025R, mRNA sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT2G35530.1 | 1e-156 | basic region/leucine zipper transcription factor 16 |