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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g074300.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 342aa MW: 38431.9 Da PI: 7.1589 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.2 | 5.4e-56 | 11 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhP+deel+++yL +k++++++ ++++i +vd++k+ePwdLp k+k +e+ewyfFs+rd+ky+tg r+nrat+sgyWk+tgkdke Sopim08g074300.0.1 11 LPPGFRFHPSDEELITYYLMNKISDSNNFIARAIGDVDLNKSEPWDLPGKAKMGEEEWYFFSQRDRKYPTGVRTNRATNSGYWKTTGKDKE 101 79*************************999999***************999999************************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s + elvg+kktLvfykgrap+gekt+Wvmheyrl Sopim08g074300.0.1 102 IFS-NLELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 137 ***.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-64 | 6 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.781 | 11 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-29 | 12 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MEGEVKEEID LPPGFRFHPS DEELITYYLM NKISDSNNFI ARAIGDVDLN KSEPWDLPGK 60 AKMGEEEWYF FSQRDRKYPT GVRTNRATNS GYWKTTGKDK EIFSNLELVG MKKTLVFYKG 120 RAPRGEKTNW VMHEYRLHSK SSYTTHKQDE WIVCRVFQKS NAGGKRYSTN NNTLRIHVNP 180 YTTLDQINPN TICISSQIMM PQVEHNTFQL AMGKSSSSSA HTMINHPEIQ EVFRGVSSSS 240 SSNLMNLHTT LQSQMNYNLG GGNGFTISGL NLNLGGGGAT TSQPGPPPPR PRQDVSSSHV 300 MMTTHDDQAG YGEDMSSGNV MNRFMVLENS SHDLDNCWGN Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-55 | 8 | 165 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-55 | 8 | 165 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-55 | 8 | 165 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-55 | 8 | 165 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-55 | 8 | 165 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-55 | 8 | 165 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-55 | 8 | 165 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-55 | 8 | 165 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-55 | 8 | 165 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-55 | 8 | 165 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-55 | 8 | 165 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-55 | 8 | 165 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-55 | 8 | 165 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-55 | 8 | 165 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004246074.1 | 0.0 | NAC domain-containing protein 79 | ||||
TrEMBL | M1CW69 | 0.0 | M1CW69_SOLTU; Uncharacterized protein | ||||
STRING | Solyc08g074300.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 6e-93 | NAC domain containing protein 38 |