PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GATA

Protein Properties

Length: 360aa MW: 40265 Da PI: 6.7917

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim08g066510.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	56.1	5.2e-18	252	286	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Sopim08g066510.0.1 252 CLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRL 286 99*****************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	3.4E-78	12	341	IPR016679	Transcription factor, GATA, plant
PROSITE profile	PS50114	12.677	246	282	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.9E-14	246	283	IPR013088	Zinc finger, NHR/GATA-type
SMART	SM00401	1.3E-16	246	296	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.66E-15	247	310	No hit	No description
CDD	cd00202	1.91E-14	251	298	No hit	No description
Pfam	PF00320	7.4E-16	252	286	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	252	277	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009416	Biological Process	response to light stimulus
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
METPDFFQTG YYNSSEKQLI SDVKNGEHFV VDDLLDLPND EGMATDDTLD LTVIGNSTDC 60 SVVHNSCNSS LSGSNHHPQS LGYRDFPQGH LSTEFALPYE DMAELEWLSN FVEESFSSNE 120 MHKMQMVQAM RNRTDSEIHQ FIPDPNRASA TSNTIFKPEM PVPAKARSKR SRMAPGNWAS 180 RLLVVSPNTT NPDSSMDTIS VQDMSSSSES GMIIPSSGKK TVKCSSAPKK KENNIHHVPS 240 NNTGSNSEGR KCLHCATDKT PQWRTGPLGP KTLCNACGVR YKSGRLVPEY RPAASPTFML 300 TKHSNSHRKV LEIRRQKEVT QVEHQHQHQF LPHNMMFDVS NADDYLIHQH MGPDFRQLI*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

METPDFFQTG YYNSSEKQLI SDVKNGEHFV VDDLLDLPND EGMATDDTLD LTVIGNSTDC  60
SVVHNSCNSS LSGSNHHPQS LGYRDFPQGH LSTEFALPYE DMAELEWLSN FVEESFSSNE  120
MHKMQMVQAM RNRTDSEIHQ FIPDPNRASA TSNTIFKPEM PVPAKARSKR SRMAPGNWAS  180
RLLVVSPNTT NPDSSMDTIS VQDMSSSSES GMIIPSSGKK TVKCSSAPKK KENNIHHVPS  240
NNTGSNSEGR KCLHCATDKT PQWRTGPLGP KTLCNACGVR YKSGRLVPEY RPAASPTFML  300
TKHSNSHRKV LEIRRQKEVT QVEHQHQHQF LPHNMMFDVS NADDYLIHQH MGPDFRQLI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250\|UniProtKB:Q8LAU9, ECO:0000269\|PubMed:25265867}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00530	DAP	Transfer from AT5G25830	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004245156.2	0.0	GATA transcription factor 12
Swissprot	P69781	2e-80	GAT12_ARATH; GATA transcription factor 12
TrEMBL	A0A3Q7HNI5	0.0	A0A3Q7HNI5_SOLLC; GATA transcription factor
STRING	Solyc08g066510.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1919	23	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	5e-74	GATA transcription factor 12

Publications ? help Back to Top
Ravindran P,Verma V,Stamm P,Kumar PP A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor. Mol Plant, 2017. 10(10): p. 1307-1320 [PMID:28917589]