![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim08g066500.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 828aa MW: 90981.1 Da PI: 5.7958 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.4 | 6.1e-19 | 5 | 63 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Sopim08g066500.0.1 5 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63 5678*****************************************************97 PP | |||||||
2 | START | 177.1 | 1.1e-55 | 150 | 358 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 laee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++++++l+v s+g g+ Sopim08g066500.0.1 150 LAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCSGVASRACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVMSTGngGT 239 7899******************************************************.8888888888********************** PP EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 ++l +++l+a+++l+p Rdf+ Ry+ +++g++vi+++S++++q+ p+ +s+vRa lpSg+li+p+++g+s +++v+h+dl+ +++ Sopim08g066500.0.1 240 IELLYMQLYAPTTLAPaRDFWLMRYTSVMEDGSLVICERSLNNTQNGPSmppVQSFVRADILPSGYLIRPCEGGGSIIHIVDHMDLEPWSV 330 ***********************************************9998899************************************* PP HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 178 hwllrslvksglaegaktwvatlqrqce 205 +++lr+l++s++ ++t++a+l+++++ Sopim08g066500.0.1 331 PEVLRPLYESSTLLSQRTTMAALRHLRQ 358 ***********************99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.742 | 1 | 64 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.8E-16 | 2 | 68 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.22E-16 | 5 | 65 | No hit | No description |
SuperFamily | SSF46689 | 1.45E-16 | 5 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.6E-16 | 6 | 63 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-19 | 7 | 63 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 8.21E-6 | 57 | 96 | No hit | No description |
PROSITE profile | PS50848 | 25.755 | 140 | 368 | IPR002913 | START domain |
CDD | cd08875 | 2.38E-80 | 144 | 359 | No hit | No description |
SMART | SM00234 | 9.8E-40 | 149 | 359 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 8.1E-22 | 150 | 355 | IPR023393 | START-like domain |
Pfam | PF01852 | 5.6E-53 | 150 | 358 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.46E-37 | 150 | 360 | No hit | No description |
Pfam | PF08670 | 3.8E-50 | 684 | 826 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 828 aa Download sequence Send to blast |
MDSGKYVRYT PEQVEALERL YHECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR 60 EKQRKESSRL QGVNRKLTAM NKLLMEENDR LQKQVSQLVY ENSFFRQQTQ TAALATTDNN 120 SCESVVTSGQ HNLTPQRPPR DASPAGLLSL AEETLTEFLS KATGTAVEWV QMPGMKPGPD 180 SIGIIAISHG CSGVASRACG LVGLEPTRVA EILKDRPSWF RDCRAVDVLN VMSTGNGGTI 240 ELLYMQLYAP TTLAPARDFW LMRYTSVMED GSLVICERSL NNTQNGPSMP PVQSFVRADI 300 LPSGYLIRPC EGGGSIIHIV DHMDLEPWSV PEVLRPLYES STLLSQRTTM AALRHLRQIS 360 QEISHPTVSG WGRRPAALRA LGQRLSKGFN EAVNGFTDEG WSMLESDGVD DVTILVNSSP 420 SKLMGANISY ANGFPSMSSA VLCAKASMLL QNVPPPILLR FLREHRSEWA DSGIDAYSAA 480 AVKAGPCSIP VTRTGSFGGQ IILPLAHTIE HEEFMEVIRL ESIGHYQDDM IMPSDIFLLQ 540 LCNGVDENAI GTCAELMFAP IDASFADDAP LLPSGFRIIP LDSKADASSP NRTLDLASTL 600 EVGPAGSRPT GDHSKNSGSA KSVMTIAFQF AFEIHLQESI AAMARQYVRS IISSVQRVAL 660 ALSPSRIGSL PGLRSPPGTP EAQTLARWIC QSYRFFLGVE LLKSASGGSE SILKEIWDHS 720 DALMCCSMKA LPVFTFANEA GLDMLETTLV ALQDISLEKI FDDNGRKALY SELPQIMQQG 780 FACLQGGICL SSMGRPISYE RAVAWKVLNE EEDAHCICFM FINWSFV* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004245155.1 | 0.0 | homeobox-leucine zipper protein ATHB-15 isoform X2 | ||||
Swissprot | Q9ZU11 | 0.0 | ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15 | ||||
TrEMBL | A0A3Q7HQY2 | 0.0 | A0A3Q7HQY2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g066500.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA457 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|