 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sopim08g065130.0.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
Family |
LBD |
Protein Properties |
Length: 302aa MW: 33614.5 Da PI: 9.9455 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim08g065130.0.1 | genome | CSHL | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 112.4 | 3.1e-35 | 42 | 140 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
aCaaCk++rr+Ca+dC lapyfp e++k+f nvhklFG+sn+lkllk++++ +r+++m+sl++eA++ra d v G++++i++l++ ++ +
Sopim08g065130.0.1 42 ACAACKYQRRRCAPDCLLAPYFPVERNKEFLNVHKLFGVSNLLKLLKNVQPFQRDTTMKSLIFEANIRAGDLVGGCYRIIMNLERLINFYE 132
7****************************************************************************************** PP
DUF260 92 aelallke 99
+el+ + +
Sopim08g065130.0.1 133 TELQFTYN 140
*9998766 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MTHIVNHNQN VSSSPLNTTT TTSTRVAHRG GGGGSGGNGS QACAACKYQR RRCAPDCLLA 60 PYFPVERNKE FLNVHKLFGV SNLLKLLKNV QPFQRDTTMK SLIFEANIRA GDLVGGCYRI 120 IMNLERLINF YETELQFTYN EIFRVQAVDI QNNINRTTVN TNTTDVQVMN SIGGFHRSEE 180 IDGFGDYSMS GFGDSSKRIN SISSLNSQII KIELLDDIKD EFAVRQGEFE TKVAISSSKD 240 KQSMVENGDL KPYFGKNCKG KALARCMIMN GAKGLRKKIK TKLKGVIQLK KIMSFHLNIS 300 Y*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |