PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 468aa MW: 51814.8 Da PI: 9.1969

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim08g063040.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Sopim08g063040.0.1 81 FVCEICNKGFQRDQNLQLHRRGH 103 89*******************88 PP
2	zf-C2H2	12.6	0.00041	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Sopim08g063040.0.1 157 WKCEKCSKRYAVQSDWKAHSKIC 179 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.87E-6	80	103	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-5	80	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	81	103	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	81	103	IPR007087	Zinc finger, C2H2
Pfam	PF12171	7.3E-5	81	103	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	83	103	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.1E-4	145	178	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.87E-6	152	177	No hit	No description
SMART	SM00355	130	157	177	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MIKGMLGDDS MSNLTSASNE ASISSTNNRI EIGSHVLYPQ LQNIQTQPPP NKKKRNLPGN 60 PDPEAEVVAL SPRSLLATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRSNKEVKKK 120 VYVCPEASCV HHHPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKRYAVQS DWKAHSKICG 180 TREYRCDCGT LFSRRDSFIT HRAFCDALTE ESSRTIIPPP NSSTSHHLNL HTLQNFQMKQ 240 EQQQQNNDLS SQLFIQNPNG NSSNMFGAPP PHMSATALLQ KAAQIGVTSS SHTANNMSAT 300 TFFSPTTSTT TGIAMSGSGS GAGVARQYHP FENNNNNNNT NTDFVTGNTS FPDFGASVTP 360 GFMEQVHDMQ NMMATTAPSL PCTSFDEGFG RGAHLMRQGK ENNEGLTRDF LGLRAFPHHR 420 DFLSTTTPPA ALHYNMGSSA AAAAPASFDQ HHHHHQNQNQ NQLPWQN*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MIKGMLGDDS MSNLTSASNE ASISSTNNRI EIGSHVLYPQ LQNIQTQPPP NKKKRNLPGN  60
PDPEAEVVAL SPRSLLATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRSNKEVKKK  120
VYVCPEASCV HHHPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKRYAVQS DWKAHSKICG  180
TREYRCDCGT LFSRRDSFIT HRAFCDALTE ESSRTIIPPP NSSTSHHLNL HTLQNFQMKQ  240
EQQQQNNDLS SQLFIQNPNG NSSNMFGAPP PHMSATALLQ KAAQIGVTSS SHTANNMSAT  300
TFFSPTTSTT TGIAMSGSGS GAGVARQYHP FENNNNNNNT NTDFVTGNTS FPDFGASVTP  360
GFMEQVHDMQ NMMATTAPSL PCTSFDEGFG RGAHLMRQGK ENNEGLTRDF LGLRAFPHHR  420
DFLSTTTPPA ALHYNMGSSA AAAAPASFDQ HHHHHQNQNQ NQLPWQN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-35	153	214	3	64	Zinc finger protein JACKDAW
5b3h_F	1e-35	153	214	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU457765	0.0	CU457765.7 S.lycopersicum DNA sequence from clone LE_HBa-76I13, complete sequence.
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004245090.1	0.0	protein indeterminate-domain 12
Swissprot	Q8H1F5	1e-118	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	M1AER7	0.0	M1AER7_SOLTU; Uncharacterized protein
STRING	Solyc08g063040.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-114	indeterminate(ID)-domain 2

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]