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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim08g063040.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
C2H2 |
Protein Properties |
Length: 468aa MW: 51814.8 Da PI: 9.1969 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim08g063040.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 17.3 | 1.3e-05 | 81 | 103 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+k F r nL+ H r H
Sopim08g063040.0.1 81 FVCEICNKGFQRDQNLQLHRRGH 103
89*******************88 PP
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2 | zf-C2H2 | 12.6 | 0.00041 | 157 | 179 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k++ +s+ k H + +
Sopim08g063040.0.1 157 WKCEKCSKRYAVQSDWKAHSKIC 179
58*****************9876 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 468 aa
Download sequence Send
to blast |
MIKGMLGDDS MSNLTSASNE ASISSTNNRI EIGSHVLYPQ LQNIQTQPPP NKKKRNLPGN 60 PDPEAEVVAL SPRSLLATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRSNKEVKKK 120 VYVCPEASCV HHHPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKRYAVQS DWKAHSKICG 180 TREYRCDCGT LFSRRDSFIT HRAFCDALTE ESSRTIIPPP NSSTSHHLNL HTLQNFQMKQ 240 EQQQQNNDLS SQLFIQNPNG NSSNMFGAPP PHMSATALLQ KAAQIGVTSS SHTANNMSAT 300 TFFSPTTSTT TGIAMSGSGS GAGVARQYHP FENNNNNNNT NTDFVTGNTS FPDFGASVTP 360 GFMEQVHDMQ NMMATTAPSL PCTSFDEGFG RGAHLMRQGK ENNEGLTRDF LGLRAFPHHR 420 DFLSTTTPPA ALHYNMGSSA AAAAPASFDQ HHHHHQNQNQ NQLPWQN*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000305}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CU457765 | 0.0 | CU457765.7 S.lycopersicum DNA sequence from clone LE_HBa-76I13, complete sequence. |
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |