PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g062780.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 597aa MW: 67677.8 Da PI: 5.8888 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.8 | 1.5e-11 | 329 | 372 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++Er+RR+++N+++ Lr l+Pk + Kl+ a+iL A+eY+ +L Sopim08g062780.0.1 329 LMAERKRRKKLNERLYALRALVPKiS------KLDRASILGDAIEYVMEL 372 589*********************66......**************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.5E-16 | 2 | 147 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 15.44 | 323 | 372 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.85E-12 | 325 | 377 | No hit | No description |
SuperFamily | SSF47459 | 3.27E-16 | 326 | 386 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-15 | 329 | 378 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-9 | 329 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.7E-16 | 330 | 386 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048657 | Biological Process | anther wall tapetum cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 597 aa Download sequence Send to blast |
MERLRPIMSL KGWDYCVLWK LSEDQRFLEW ICCCCGGAEK NMHGCGQEIF FPDSSTSTCR 60 DVMFQHPTTT ACNLLAQVPP SLALDCGVYA QTLLSNQAKW MNFVPFSESN ISNEIMGTRA 120 LIPSPLGLLE LFSTQQLAED EKVIEFVSAQ CNIYLEQQAM MNSTFSNGVE ENNTSKPFPT 180 EGERDRDDHI KDSQNHYKQR VSPAATSDHL SFDFPLKRKQ LDSCSMNFLP PFSTYSTPEV 240 DNNTGGNMLF DQSTSDMTHF SENRYMSEMD AYLQKQMMRS SSTQAGIDDE SIKHDNGRSN 300 SGSDSDQNEE EDDPKYRRRN GKGPQSKNLM AERKRRKKLN ERLYALRALV PKISKLDRAS 360 ILGDAIEYVM ELEKQVKDLQ LEVEEHSDDD GTGGGRNSDQ IHPVVLSHNG TKNRPKSDNG 420 KLTNGSQREI STNSNGSTDP SRKNQDVEEN DKLQQMEPQV EVAQLDGNEF FVKVFREHKA 480 GGFVRTLEAL NSLGLEVTNV NATRHTCLVS SIFKVEQKRD NEMVQADHVR DTLLELTRNP 540 SRGWSEMGRA SSDNINNNNA NGTTDYHQHQ LHDHHLDNNN QHKQTNSHHF HTHHHH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-12 | 331 | 382 | 12 | 63 | Transcription factor MYC2 |
5gnj_B | 2e-12 | 331 | 382 | 12 | 63 | Transcription factor MYC2 |
5gnj_E | 2e-12 | 331 | 382 | 12 | 63 | Transcription factor MYC2 |
5gnj_F | 2e-12 | 331 | 382 | 12 | 63 | Transcription factor MYC2 |
5gnj_G | 2e-12 | 331 | 382 | 12 | 63 | Transcription factor MYC2 |
5gnj_I | 2e-12 | 331 | 382 | 12 | 63 | Transcription factor MYC2 |
5gnj_M | 2e-12 | 331 | 382 | 12 | 63 | Transcription factor MYC2 |
5gnj_N | 2e-12 | 331 | 382 | 12 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 316 | 337 | RRRNGKGPQSKNLMAERKRRKK |
2 | 331 | 338 | ERKRRKKL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010813 | 0.0 | AP010813.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0076H19, complete sequence. | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019070622.1 | 0.0 | transcription factor ABORTED MICROSPORES isoform X1 | ||||
TrEMBL | A0A3Q7HQ20 | 0.0 | A0A3Q7HQ20_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g062780.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9672 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 1e-128 | bHLH family protein |