PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g062780.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 597aa    MW: 67677.8 Da    PI: 5.8888
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g062780.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11329372654
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++Er+RR+++N+++  Lr l+Pk +      Kl+ a+iL  A+eY+ +L
  Sopim08g062780.0.1 329 LMAERKRRKKLNERLYALRALVPKiS------KLDRASILGDAIEYVMEL 372
                         589*********************66......**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.5E-162147IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.44323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-12325377No hitNo description
SuperFamilySSF474593.27E-16326386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-15329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9329373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-16330386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MERLRPIMSL KGWDYCVLWK LSEDQRFLEW ICCCCGGAEK NMHGCGQEIF FPDSSTSTCR  60
DVMFQHPTTT ACNLLAQVPP SLALDCGVYA QTLLSNQAKW MNFVPFSESN ISNEIMGTRA  120
LIPSPLGLLE LFSTQQLAED EKVIEFVSAQ CNIYLEQQAM MNSTFSNGVE ENNTSKPFPT  180
EGERDRDDHI KDSQNHYKQR VSPAATSDHL SFDFPLKRKQ LDSCSMNFLP PFSTYSTPEV  240
DNNTGGNMLF DQSTSDMTHF SENRYMSEMD AYLQKQMMRS SSTQAGIDDE SIKHDNGRSN  300
SGSDSDQNEE EDDPKYRRRN GKGPQSKNLM AERKRRKKLN ERLYALRALV PKISKLDRAS  360
ILGDAIEYVM ELEKQVKDLQ LEVEEHSDDD GTGGGRNSDQ IHPVVLSHNG TKNRPKSDNG  420
KLTNGSQREI STNSNGSTDP SRKNQDVEEN DKLQQMEPQV EVAQLDGNEF FVKVFREHKA  480
GGFVRTLEAL NSLGLEVTNV NATRHTCLVS SIFKVEQKRD NEMVQADHVR DTLLELTRNP  540
SRGWSEMGRA SSDNINNNNA NGTTDYHQHQ LHDHHLDNNN QHKQTNSHHF HTHHHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-123313821263Transcription factor MYC2
5gnj_B2e-123313821263Transcription factor MYC2
5gnj_E2e-123313821263Transcription factor MYC2
5gnj_F2e-123313821263Transcription factor MYC2
5gnj_G2e-123313821263Transcription factor MYC2
5gnj_I2e-123313821263Transcription factor MYC2
5gnj_M2e-123313821263Transcription factor MYC2
5gnj_N2e-123313821263Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316337RRRNGKGPQSKNLMAERKRRKK
2331338ERKRRKKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0108130.0AP010813.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0076H19, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019070622.10.0transcription factor ABORTED MICROSPORES isoform X1
TrEMBLA0A3Q7HQ200.0A0A3Q7HQ20_SOLLC; Uncharacterized protein
STRINGSolyc08g062780.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96722227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-128bHLH family protein