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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g048370.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 327aa MW: 36484.1 Da PI: 8.8306 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.2 | 1.7e-39 | 42 | 184 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssas 83 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG d++sk +eWLl++a p+i el+ + s +e++ss+++ Sopim08g048370.0.1 42 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGCDQPSKVVEWLLKAAAPSIAELPPLedlqdtlqlS--------NEKRSSEHG 124 689*************************************************************5444333321........333333333 PP TCP 84 nsssg........kaaksaakskksqksaasalnlak.esrakarararertrekmrikn 134 ++s++ +++++++ ++s++s+ s l+l++ +sr kar+rarer +ek ++ + Sopim08g048370.0.1 125 FDSADvemdddlnYNNQQQPSCSNSETSKGSGLSLSRsDSRVKARERARERATEKVANHH 184 333335666666666666778888888888899**999****************998864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-39 | 43 | 181 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.958 | 44 | 102 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.952 | 162 | 179 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MSNKEDEQYD VGEVKKSGDL GGGIGKLYGW PTSRIVRVSR ASGGKDRHSK VLTSKGLRDR 60 RVRLSVNTAI QFYDLQDRLG CDQPSKVVEW LLKAAAPSIA ELPPLEDLQD TLQLSNEKRS 120 SEHGFDSADV EMDDDLNYNN QQQPSCSNSE TSKGSGLSLS RSDSRVKARE RARERATEKV 180 ANHHRNMHPS SSFTELLTGG MSDNNNNKTS VNDDQNTPRQ WSTNPLEYFT DGQIYLGNTL 240 RPVSPPMFSI TGGPFSPILP LLCLVIRGTD HILVPQLDMT TSIQIRKEKK RSNFKFHLVI 300 LNGSSLKVPK EAPIYAFLCY RLIILY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-20 | 49 | 103 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 6e-20 | 49 | 103 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010324913.1 | 0.0 | transcription factor TCP2-like | ||||
Refseq | XP_010324914.1 | 0.0 | transcription factor TCP2-like | ||||
Refseq | XP_010324915.1 | 0.0 | transcription factor TCP2-like | ||||
Swissprot | Q93V43 | 6e-51 | TCP2_ARATH; Transcription factor TCP2 | ||||
TrEMBL | A0A3Q7HNW2 | 0.0 | A0A3Q7HNW2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g048370.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2464 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 8e-39 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Publications ? help Back to Top | |||
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