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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g041820.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TALE | ||||||||
Protein Properties | Length: 350aa MW: 39649.4 Da PI: 5.2928 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.8 | 7.8e-08 | 298 | 331 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Sopim08g041820.0.1 298 KWPYPTEEDKAKLVEETGLQLKQINNWFINQRKR 331 469*****************************87 PP | |||||||
2 | ELK | 28 | 5e-10 | 252 | 273 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++L+++++E++ Sopim08g041820.0.1 252 ELKHELKQGYKEKLVDIREEIL 273 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.8E-17 | 87 | 131 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.2E-16 | 89 | 130 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.8E-28 | 140 | 195 | IPR005541 | KNOX2 |
Pfam | PF03791 | 6.7E-20 | 145 | 194 | IPR005541 | KNOX2 |
Pfam | PF03789 | 1.8E-6 | 252 | 273 | IPR005539 | ELK domain |
SMART | SM01188 | 9.2E-4 | 252 | 273 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.144 | 252 | 272 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 272 | 335 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.06E-16 | 274 | 338 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.1E-11 | 274 | 339 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.50E-11 | 275 | 336 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-25 | 279 | 336 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.6E-18 | 292 | 331 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009722 | Biological Process | detection of cytokinin stimulus | ||||
GO:0071345 | Biological Process | cellular response to cytokine stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MDMPDQNSPI LMTSLPEQDV KPLEHQQPPP TSLNREILLP QTQYTGESNS NQWLSRSILQ 60 RNIQASNDSD LTKDEFGESE AVNWQNAGYK SEILAHPLFE QLLSAHVACL RIATPVDQLP 120 RIDAQLAQSQ QIVGKYSGLG HGNLSDDKEL DQFLTHYVLL LCSFKEQLQQ HVRVHAMEAV 180 MACWEIEQSL QSLTGVSPGE GTGATMSDDE DEQVDSDANL FEGSLDGHDS MGFGPLIPTE 240 SERSLMERVR QELKHELKQG YKEKLVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP 300 YPTEEDKAKL VEETGLQLKQ INNWFINQRK RNWHSNPSSS TALKSKRKR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-12 | 275 | 339 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 328 | 348 | RKRNWHSNPSSSTALKSKRKR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB004797 | 0.0 | AB004797.1 Nicotiana tabacum NTH23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004244941.1 | 0.0 | homeobox protein knotted-1-like 3 | ||||
Swissprot | P48000 | 1e-176 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A3Q7HN97 | 0.0 | A0A3Q7HN97_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g041820.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1432 | 24 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-179 | KNOTTED1-like homeobox gene 3 |
Publications ? help Back to Top | |||
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