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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g028850.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 109aa MW: 12280 Da PI: 8.7275 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 45.6 | 2.2e-14 | 9 | 108 | 2 | 92 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk......kvkaeek...ewyfFskrdkkyatgkrknratksg 81 GfrF+Ptd e v +L + ++gk ++++ + ++vd y+ ePwd+ + + +++++ ++ fF+++ kk+ +++ + + ++g Sopim08g028850.0.1 9 KEGFRFSPTDTEAV-TFLLRLIAGKFMNVSGFiTTHVDTYSKqEPWDICShgvpycN-YNGDNdcsQYPFFITKLKKKGKSRYSGDVGNKG 97 68************.8999*******99999834556877544*****634677743.3444424244588888888887767777999** PP NAM 82 yWkatgkdkev 92 Wk++gk+k+v Sopim08g028850.0.1 98 CWKHQGKSKPV 108 *******9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.76E-11 | 7 | 108 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 15.167 | 8 | 108 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.8E-7 | 10 | 106 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MECIIENLKE GFRFSPTDTE AVTFLLRLIA GKFMNVSGFI TTHVDTYSKQ EPWDICSHGV 60 PYCNYNGDND CSQYPFFITK LKKKGKSRYS GDVGNKGCWK HQGKSKPV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 86 | LKKKGKS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015169693.1 | 6e-54 | PREDICTED: NAC domain-containing protein 78-like | ||||
TrEMBL | A0A3Q7IH21 | 5e-76 | A0A3Q7IH21_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g028850.1.1 | 8e-77 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2219 | 12 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54330.1 | 1e-08 | NAC domain containing protein 20 |