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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g008600.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 453aa MW: 51296 Da PI: 6.9605 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.9 | 3.3e-12 | 273 | 317 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h e+Er+RR+++N++f Lr+++P K++Ka+ L Av YI++L Sopim08g008600.0.1 273 HVEAERKRREKLNHRFYALRSVVPYV-----SKMDKASLLGDAVTYINEL 317 899**********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 9.8E-48 | 18 | 185 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 5.74E-14 | 266 | 322 | No hit | No description |
PROSITE profile | PS50888 | 16.463 | 268 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.85E-17 | 272 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.6E-16 | 273 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.6E-10 | 273 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-15 | 274 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MENLNISTSS TPSQPNTLQK TLQYIIHNRQ EWWVYAIFWQ ASKDVNNRLI LSWGDGHFRG 60 TKDTTGSTKT GHGQYHQFQK KFGFNDISET NNNVTDTEWF YMVSMPQCFV ADDDLVIRAY 120 TSASHVWLAS YYELQIYNCE RAKEANLHGI RTIVCISTTS GVVELGSSDV IQENWEFVQF 180 IRSLFGSNNN MNTTSHLPVN QVTLGDDHKV AKCGSNIIVK QEMTIGNLLS ESGISDFEND 240 DSLTINNVMN GSIKRAKKGD SSHIRREMAM DVHVEAERKR REKLNHRFYA LRSVVPYVSK 300 MDKASLLGDA VTYINELKAK IKNLESKLIE PQKKHILMEQ HDSHSASSTI VTDHGANNKS 360 LFSSNGVRNG MEIEVKIIGS EGVIRVQSLD MNYPCTRLMN AMKEMKFQIY HASISSVKDL 420 MLQDIVIRVP EEFSNEETLK SAIISKLSVM EN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-29 | 16 | 188 | 7 | 195 | Transcription factor MYC3 |
4rqw_B | 1e-29 | 16 | 188 | 7 | 195 | Transcription factor MYC3 |
4rs9_A | 1e-29 | 16 | 188 | 7 | 195 | Transcription factor MYC3 |
4yz6_A | 1e-29 | 16 | 188 | 7 | 195 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 276 | 281 | ERKRRE |
2 | 277 | 282 | RKRREK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004244656.1 | 0.0 | transcription factor MYC2-like | ||||
TrEMBL | A0A3Q7HIE6 | 0.0 | A0A3Q7HIE6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g008600.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1072 | 21 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 4e-69 | bHLH family protein |