PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim08g006490.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Protein Properties

Length: 277aa MW: 32296.2 Da PI: 10.0859

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim08g006490.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.8	3.8e-13	17	95	10	99
HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +k + l +p f+ ++ +g+ +++ + + g +W++k+ ++++ +++GW eFv+++gLk g +++F+++g++ef +++f++ Sopim08g006490.0.1 17 GFK-NGLKIPIGFL-KYlKGN--DNVEHAILKRGGYKWSMKV--NGHR----FEAGWVEFVEQHGLKLGNILMFRHEGNMEF--EFSIFDS 95 444.55******.555666..567889999******..7777....9**********************99999..8888876 PP
2	B3	49.1	1e-15	163	244	5	88
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 ++++++ ++g l lp++fa ++g+ + ++ +l+++de+ rsW+vkl+ + k ++y+ + G +F +n L+ gD ++F+++ + Sopim08g006490.0.1 163 TIREYNISRGYLHLPRQFAYANGLAN-KKCDLIIRDERQRSWNVKLS-SSKTRSYISGCGRTKFFADNCLNKGDCIMFEVVTNG 244 5678999*************8775.4459***********4.444457999********************87643 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-18	3	98	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.3E-19	5	102	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.97	7	96	IPR003340	B3 DNA binding domain
CDD	cd10017	4.29E-12	8	94	No hit	No description
SMART	SM01019	6.1E-14	10	96	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.8E-10	18	95	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	4.7E-16	157	252	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.22E-14	158	257	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	1.8E-8	159	254	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.08	159	254	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.7E-13	164	246	IPR003340	B3 DNA binding domain
CDD	cd10017	1.63E-9	169	239	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MKIPPKKPHF LKPIQPGFKN GLKIPIGFLK YLKGNDNVEH AILKRGGYKW SMKVNGHRFE 60 AGWVEFVEQH GLKLGNILMF RHEGNMEFEF SIFDSSHCDR EYVEYMEEVG DHTREEISKK 120 FKFKEDATER PRQKIKSSRK TSSHIIKVAN HHKSFGHSHV ECTIREYNIS RGYLHLPRQF 180 AYANGLANKK CDLIIRDERQ RSWNVKLSSS KTRSYISGCG RTKFFADNCL NKGDCIMFEV 240 VTNGETPIWK FQVTYREVPL QMFQGKFSHV TNLLFL*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	1e-173	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019070638.1	0.0	B3 domain-containing protein REM9-like
TrEMBL	A0A3Q7HHD9	0.0	A0A3Q7HHD9_SOLLC; Uncharacterized protein
STRING	Solyc08g006490.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA322	15	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31690.1	4e-33	B3 family protein