PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g006280.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 566aa MW: 65488.6 Da PI: 9.6825 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.3 | 1.2e-17 | 138 | 223 | 3 | 90 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +++++++k g l+lp +f++++++ ++ + +l+++de+ rsW+++l + +s+r+vl +GW eF +an++kegD v+F+ ++++e+ Sopim08g006280.0.1 138 VCTIRPYSFKYGYLCLPLDFVTKNNLRHKIG-DLIIRDEKQRSWNLRL-NSFSSKRFVLNGGWPEFSNANDIKEGDEVMFEIVSNEEK 223 567899******************9998887.9***************.4667788*************************9887555 PP | |||||||
2 | B3 | 36.9 | 6.3e-12 | 458 | 537 | 5 | 86 |
-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ++++ l ++ l +p kfa ++ ++ +l+++d + rsW+v+l r + + +++++GWk+ + +kegD ++F+ + Sopim08g006280.0.1 458 NVNPYCLVTDTLLIPEKFALANdlF--RIKKCDLIIRDDNDRSWNVTL--REHNNYVFIKDGWKKIRDTYYIKEGDQIMFEIVT 537 56788888999***********663..445558***************..*******************************664 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-11 | 8 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-11 | 8 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.106 | 10 | 99 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0012 | 13 | 99 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.7E-18 | 133 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-17 | 134 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.87E-11 | 135 | 216 | No hit | No description |
SMART | SM01019 | 4.5E-13 | 136 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.015 | 136 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-15 | 137 | 224 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-12 | 449 | 541 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.87E-13 | 449 | 544 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.955 | 454 | 549 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.8E-7 | 455 | 550 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-9 | 458 | 540 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.26E-9 | 466 | 534 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 566 aa Download sequence Send to blast |
MATMKGYSEK PSFLMFISPS LKQGFTFPDE FLKHLKGHDQ YEHAILRWAN KNWPVKLNGV 60 RLEDGLEKFV EQNNLEEGEI LSIEYEGNMK FEAIRFDPSK QCEILEVQPR APKVVKSSDE 120 SKSKGAATQK HLGHPYFVCT IRPYSFKYGY LCLPLDFVTK NNLRHKIGDL IIRDEKQRSW 180 NLRLNSFSSK RFVLNGGWPE FSNANDIKEG DEVMFEIVSN EEKQIWQFKK KASNNVKSSL 240 LVEPPKVKSR KPSQRRDIKA MMVDVVHMPV DKLIHKNKSS FVAKTPKSKS RELRQRQELE 300 DQTLKAFPHK SFDESNHNIK SAPLAKTPKP KSRRPAERDD FEDRSLEAVT HKPNEPSKLK 360 LGGLHQRQEF EEGTFEAATH KSLDKPTHKK LKSTPLAEPS QSKPRELPQK QNFEDQTTNV 420 ATQKPHDESN YYTTSSKEAT PLKDDPHKSS DNPCILINVN PYCLVTDTLL IPEKFALAND 480 LFRIKKCDLI IRDDNDRSWN VTLREHNNYV FIKDGWKKIR DTYYIKEGDQ IMFEIVTGGD 540 KPIWKFHGKI SKEFVKMIQQ NGLEQ* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009283 | 1e-129 | AP009283.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0216M19, complete sequence. | |||
GenBank | HG975520 | 1e-129 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010324533.1 | 0.0 | uncharacterized protein LOC104648601 | ||||
TrEMBL | A0A3Q7HH76 | 0.0 | A0A3Q7HH76_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g006280.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA20987 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 4e-19 | B3 family protein |