PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g006230.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 335aa MW: 38881.3 Da PI: 6.7806 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.4 | 2.9e-14 | 44 | 119 | 14 | 99 |
T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++l +p +f+ ++ g++ +++ + + g++W vk+ ++ + l++GW++F+++++L gDf+vFk++g++ef v++f++ Sopim08g006230.0.1 44 SILKIPIDFL-KYleGMN---HIKHAILKSMGKKWLVKV--NGWR----LEEGWEKFAEEHDLHLGDFLVFKHEGDMEF--EVSIFDS 119 7799******.6655444...456777788*********..6666....9***********************999999..9999986 PP | |||||||
2 | B3 | 46.5 | 6.5e-15 | 164 | 239 | 6 | 84 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 +++++ ++g l+lpk+fa ++g+ + ++ +l+++de+ rsW+++l +++ + + W++F+ n+Lk gD v+F+ Sopim08g006230.0.1 164 VRPNYISNGYLRLPKHFAIANGLTN-KKCDLIVRDERQRSWNLRL--VAYDSCVRVYGEWSNFCIVNNLKKGDYVTFEI 239 567889999************8885.4569***************..455444556677******************95 PP | |||||||
3 | B3 | 41.3 | 2.7e-13 | 251 | 317 | 17 | 87 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +lp +f++++g+ +++ +++l de+ rsW+v l +++ ++ +++GW +F +ang++ gD+ F+l+++ Sopim08g006230.0.1 251 YLPMDFVKSNGLMSRS--EMILIDEKQRSWSVWL--GQTGHQFGIKRGWTQFRNANGIQLGDTYKFELTNN 317 79********988555..8***************..999999*************************9764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.802 | 31 | 120 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.0E-17 | 40 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.1E-12 | 40 | 120 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.12E-17 | 41 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.3E-11 | 44 | 119 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.94E-13 | 46 | 118 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 8.2E-15 | 157 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-16 | 158 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.377 | 159 | 250 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-8 | 160 | 245 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.7E-13 | 164 | 240 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.22E-14 | 167 | 238 | No hit | No description |
SMART | SM01019 | 2.6E-8 | 246 | 331 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-14 | 250 | 331 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.06E-15 | 250 | 333 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.73E-10 | 251 | 325 | No hit | No description |
Pfam | PF02362 | 4.0E-11 | 251 | 317 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.928 | 252 | 328 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MICNLGDLLI FKHEGDMEFE SSSDCDENRF KETSNFSNRF SQVSILKIPI DFLKYLEGMN 60 HIKHAILKSM GKKWLVKVNG WRLEEGWEKF AEEHDLHLGD FLVFKHEGDM EFEVSIFDSS 120 HCDREYTEYL LEGVDNAEET FKKVKFKEAA THNCRGQSHY QCIVRPNYIS NGYLRLPKHF 180 AIANGLTNKK CDLIVRDERQ RSWNLRLVAY DSCVRVYGEW SNFCIVNNLK KGDYVTFEIV 240 PYGEKICKTS YLPMDFVKSN GLMSRSEMIL IDEKQRSWSV WLGQTGHQFG IKRGWTQFRN 300 ANGIQLGDTY KFELTNNGTI PIAHVSILEV KGCE* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009283 | 1e-170 | AP009283.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0216M19, complete sequence. | |||
GenBank | HG975520 | 1e-170 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025888238.1 | 0.0 | B3 domain-containing protein REM10-like isoform X2 | ||||
TrEMBL | A0A3Q7HK07 | 0.0 | A0A3Q7HK07_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g006230.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 4e-41 | B3 family protein |