PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim08g005780.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

BES1

Protein Properties

Length: 667aa MW: 75285.5 Da PI: 6.5104

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim08g005780.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	159.3	2.6e-49	60	202	3	143
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspess 93 + rk+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+ve+DGtt+r+ p ++a+ +g+ + +s+es+ Sopim08g005780.0.1 60 KSRKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPVRADMNDVLAALARQAGWTVEPDGTTFRQTPAPVNNASNMGTYQVMSVESP 150 579************************************************************************************** PP DUF822 94 lq.sslkssalaspvesysaspksssfpspssldsislasa.asllpvlsvl 143 ++ ss +++++++ v+ + ++++ ++++sp+s+dsi ++++ +++ +++s+ Sopim08g005780.0.1 151 VSgSSFRNCSTRASVDCQPSVTRINESLSPASFDSIVVTESdTKVDKFTSTS 202 **********************************9998864444444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.6E-50	60	205	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	1.82E-158	228	660	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.7E-170	230	660	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	4.3E-82	253	623	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-52	268	282	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-52	289	307	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-52	311	332	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-52	404	426	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-52	477	496	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-52	511	527	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-52	528	539	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-52	546	569	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-52	582	604	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence Send to blast
MSNPHHHISN TQDPDPQFPN PNDDPNPTHH LQPQSNPQPR RPRGFAATSA AAAATGTINK 60 SRKEREKEKE RTKLRERHRR AITSRMLAGL RQYGNFPLPV RADMNDVLAA LARQAGWTVE 120 PDGTTFRQTP APVNNASNMG TYQVMSVESP VSGSSFRNCS TRASVDCQPS VTRINESLSP 180 ASFDSIVVTE SDTKVDKFTS TSPMNSTGCL EAGQLMQELH CGEHGGSFSE TQYVPVFVML 240 SSGVINNFCQ LMDPDGVKQE LQQLKSLKID GVVVNCWWGI VESWVPQKYE WSGYRELFKI 300 IRDFNMKLQV VMAFHENGGS DTGGMFISLP QWVLEIGKDN QDIFFTDHQG RRNTECLSWG 360 IDKERVLRGR TAIEVYFDLM RSFRTEFDDL FTDGLISAVE IGLGASGELK YPSFSERMGW 420 RYPGIGEFQC YDKYSLQNLR KAATSRGHSF WAKGPDNAGF YNAKPHETGF FCERGDYDSY 480 YGRFFLHWYR QVLIDHANNV LTLASLAFEG IQIVVKIPSI YWWYRTSSHA AELTAGYYNP 540 TNQDGYSPVF EVLKKHSVTI KFVSSGLQVP ETDDALADPE GLSWQIINSA WDKKITVAGQ 600 NAFPCYDREG FMRLVETAKP RNDPDRHRFS FFAFQQPSPL VQSAICFSEL DYFIKCMHGE 660 INNVES*

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence Send to blast

MSNPHHHISN TQDPDPQFPN PNDDPNPTHH LQPQSNPQPR RPRGFAATSA AAAATGTINK  60
SRKEREKEKE RTKLRERHRR AITSRMLAGL RQYGNFPLPV RADMNDVLAA LARQAGWTVE  120
PDGTTFRQTP APVNNASNMG TYQVMSVESP VSGSSFRNCS TRASVDCQPS VTRINESLSP  180
ASFDSIVVTE SDTKVDKFTS TSPMNSTGCL EAGQLMQELH CGEHGGSFSE TQYVPVFVML  240
SSGVINNFCQ LMDPDGVKQE LQQLKSLKID GVVVNCWWGI VESWVPQKYE WSGYRELFKI  300
IRDFNMKLQV VMAFHENGGS DTGGMFISLP QWVLEIGKDN QDIFFTDHQG RRNTECLSWG  360
IDKERVLRGR TAIEVYFDLM RSFRTEFDDL FTDGLISAVE IGLGASGELK YPSFSERMGW  420
RYPGIGEFQC YDKYSLQNLR KAATSRGHSF WAKGPDNAGF YNAKPHETGF FCERGDYDSY  480
YGRFFLHWYR QVLIDHANNV LTLASLAFEG IQIVVKIPSI YWWYRTSSHA AELTAGYYNP  540
TNQDGYSPVF EVLKKHSVTI KFVSSGLQVP ETDDALADPE GLSWQIINSA WDKKITVAGQ  600
NAFPCYDREG FMRLVETAKP RNDPDRHRFS FFAFQQPSPL VQSAICFSEL DYFIKCMHGE  660
INNVES*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-123	233	660	11	444	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004244442.1	0.0	beta-amylase 8 isoform X2
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A3Q7IDQ8	0.0	A0A3Q7IDQ8_SOLLC; Beta-amylase
STRING	Solyc08g005780.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1607	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]