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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sopim07g066160.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
C2H2 |
| Protein Properties |
Length: 332aa MW: 36791.2 Da PI: 6.6771 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim07g066160.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 21.2 | 7.7e-07 | 90 | 110 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C+ Cgk+F++ +L H+r+H
Sopim07g066160.0.1 90 CKVCGKVFPSMKSLFGHMRSH 110
********************9 PP
|
| 2 | zf-C2H2 | 16.1 | 3.3e-05 | 243 | 265 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C+ CgksF ++ L H ++H
Sopim07g066160.0.1 243 YECNTCGKSFATHQALGGHKSSH 265
99**************9999988 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF57667 | 1.9E-5 | 35 | 64 | No hit | No description |
| Pfam | PF13912 | 1.6E-8 | 38 | 60 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.34 | 38 | 60 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.889 | 38 | 65 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 40 | 60 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 9.702 | 88 | 115 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.0031 | 88 | 110 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 1.8E-9 | 89 | 112 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 7.7E-10 | 89 | 110 | No hit | No description |
| PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 9.1E-4 | 90 | 110 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 7.7E-10 | 238 | 265 | No hit | No description |
| Pfam | PF13912 | 4.2E-9 | 243 | 266 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 11.78 | 243 | 270 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 1.8E-4 | 243 | 265 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 0.03 | 243 | 265 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 245 | 265 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 332 aa
Download sequence Send
to blast |
MGTLLINQIS EKEVLGDEKD DVMGFGDEDE ISKDNKRRIC RVCKKVFGSG KALGGHMRIH 60
VESRSKKEKS KPREEVDVEN CNNDELVPIC KVCGKVFPSM KSLFGHMRSH PEREWRGILP 120
PHLKSNDVKK AKKTASVPGW SVTAKRGRKP NAEEEDEQLQ DAVHHLMLLA NGDSIESVVT 180
GHDHTPEEEL EKTNSNSLTS KAENEEFVSE ELDRKKKKRK LRHLNSVHDS PASVAVTATP 240
EKYECNTCGK SFATHQALGG HKSSHNKLRI VIENSNDSII EEAAASSSKL LGDSKLSTTG 300
GRIADFDLNE LPSDHDNELA GNPDYFPFFS I*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 212 | 220 | DRKKKKRKL |
| 2 | 213 | 218 | RKKKKR |
| 3 | 213 | 219 | RKKKKRK |
| 4 | 213 | 220 | RKKKKRKL |
| 5 | 214 | 219 | KKKKRK |
| 6 | 215 | 220 | KKKRKL |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC210366 | 0.0 | AC210366.3 Solanum lycopersicum cultivar Heinz 1706 chromosome 7 clone C07HBa0309F18, complete sequence. |
| GenBank | HG975519 | 0.0 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
