PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim07g065260.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 597aa MW: 65076.2 Da PI: 7.1825 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.1 | 2.8e-31 | 242 | 299 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk ers +++++ei+Y+g+H+h+k Sopim07g065260.0.1 242 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-EGQITEIVYKGSHDHPK 299 8****************************************.***************85 PP | |||||||
2 | WRKY | 105.6 | 2.6e-33 | 417 | 475 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ Sopim07g065260.0.1 417 LDDGYKWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 475 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.3E-26 | 234 | 300 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-24 | 236 | 300 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.355 | 236 | 300 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-33 | 241 | 299 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.3E-24 | 242 | 298 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.1E-37 | 402 | 477 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-29 | 409 | 477 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.595 | 412 | 477 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.0E-39 | 417 | 476 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.0E-26 | 418 | 475 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 597 aa Download sequence Send to blast |
MEDSHSQQQQ LHSTSEQQLR DGTNSSGGFR HNAAGSNGGA KYKLMTPAML PISRSACITI 60 PPGLSPSSFL ESPVLLSNIK AEPSPTTGSF SKFQTVQGSG GAAAFLLTRG YASGNTYTER 120 KASCFEYKYA GGSSSTSGSL ATEHVISTGL NQQHNEPLEE VQDQCYPQLL VPSSLAKHEM 180 ETSKELSLSA PINVDASSKE ESLYEPINVD AMNPRGQSSA SMQGSHADHK DVLSVTSERS 240 SDDGYNWRKY GQKLVKGSEF PRSYYKCTYP NCEVKKIFER SPEGQITEIV YKGSHDHPKP 300 QLSRRFSPGA LMSVQEDKCE KEVCFRGQEV YVEDKFNTNV QTSKTEPSST PVSPQQADTD 360 GLEGAGSQMH GTNDDMDEDD QFAKRRKMDG GMDITPVIKP IREPRVVVQT VSEVDILDDG 420 YKWRKYGQKV VRGNPNPRSY YKCTNAGCPV RKHVERASHD PKAVITTYEG KHNHDVPAAK 480 NNNHEMTGSS PVTGSSRIRA GETNSLSLDL GVSTGYRLDN GNNGQLHTLH HQVQVSRSGM 540 MLVQPAAVAA RYGIVHGGMS RFGAIDNRVQ GPSFETLPLQ PSTQSLQNYG KILLGP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-37 | 242 | 478 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 6e-37 | 242 | 478 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB711129 | 0.0 | AB711129.1 Solanum tuberosum StWRKY17 mRNA for transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004244048.1 | 0.0 | probable WRKY transcription factor 20 | ||||
TrEMBL | M1C0Z4 | 0.0 | M1C0Z4_SOLTU; Uncharacterized protein | ||||
STRING | Solyc07g065260.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4025 | 23 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.2 | 1e-148 | WRKY family protein |