PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g063970.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 428aa    MW: 46560.2 Da    PI: 9.0982
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g063970.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-05194216223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +C++Cg+ F  ++ L+ H  + H
  Sopim07g063970.0.1 194 TCHKCGEQFGKWEALEEHHLSkH 216
                         7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280195216IPR007087Zinc finger, C2H2
SuperFamilySSF563996.19E-22218426No hitNo description
Gene3DG3DSA:3.90.228.107.4E-9229423IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGEKKNMPAV WFTLKRSLHC KSGPSDVHDP KTRKELSTIL TKKGGGRSGC SRSIANLKDV  60
IHGSKRHLDK PPSCSPRSIG SSEFINPITH EVILSNSRCE LKITSFNGFQ ESGNGGGGGV  120
STNDGSTFVG TLRPGTPGPG GHPTMHYFNS GCRNTPTRRS TSFLVDKEGH TSSIASKTRY  180
SLDNDVNGTS SGVTCHKCGE QFGKWEALEE HHLSKHAVSE LLEGDSSRKI VEIICRSSWL  240
KSESQVGRIE RILKVHNTQK TLARFEEYRE MVKNKASKLP KKHPRCIADG NELLRFYGTT  300
LACGLGMNGS CCLCISDKCC VCRIIRNGFS TKKELKGGIG VFTTSTSGSA YECIEMSEDD  360
PSLRKALIVC RVVAGRVHRP LENIQEMAGQ TGFDSLAGKV GVYSNIEELY LLNPKALLPC  420
FVVICKA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5609000.0EU560900.1 Capsicum annuum clone DEG190-B transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004244163.10.0uncharacterized protein LOC101261138
TrEMBLA0A3Q7HF290.0A0A3Q7HF29_SOLLC; Uncharacterized protein
STRINGSolyc07g063970.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22442235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-171C2H2 family protein