PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g063830.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 480aa    MW: 52230 Da    PI: 6.5876
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g063830.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.67e-063684061154
                         HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Sopim07g063830.0.1 368 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 406
                         5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.49E-7349410No hitNo description
PROSITE profilePS5088812.335357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-9367416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-12367423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0064368412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MAEEFQLGRG NWWESSTSAS STTTTSSSRN KFIDSGISSC TTPSASSTTG LSSMASNFVN  60
WPIEIHEDIK VRSENSSMVF SGTDSHKRYA SGGGGGGVGQ GVLSVDDPNL QIMGLGLSSQ  120
GLDWNQPFFR SEKSGSGFRS LIQEGLSSNA NYQQEGTCQE QDHNNWSTQK LYHGNSDDSS  180
VNDYNKQLFS GHNNNLENSA VPYGSPSNML QGLLISDLNS QQQESNNFSS VSRSLYYNPS  240
YNNQPNCDVN IPTSTSSSSW SKFPQFLRTS DPSKVVQQWS LSQSPPLSHS QLSHFSGGTS  300
FWNATSAAAE DVRSGFLPQL PTNPTVDEKP KHTGEVRNTS TVTKKNSSET SNKRPRNEAP  360
SPLPAFKVRK EKMGDRITAL QQLVSPFGKT DTASVLSEAI EYIKFLHDQV NVLSTPYMKS  420
GASIQHQQNT GDKSNVNPEG GKQDLRSRGL CLVPVSSTFP VTHETTVDFW TPTFGGTFR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004244171.10.0transcription factor bHLH123
TrEMBLA0A3Q7HHF60.0A0A3Q7HHF6_SOLLC; Uncharacterized protein
STRINGSolyc07g063830.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-68bHLH family protein