 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim07g062200.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
bHLH |
| Protein Properties |
Length: 260aa MW: 29734.5 Da PI: 9.6363 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim07g062200.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 32.4 | 1.6e-10 | 89 | 139 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
+++ +Er+RR+++ + +++Lr l+P+ +K s ++ Le+ v+Y+k+L
Sopim07g062200.0.1 89 KVMRRDVERQRRRDMAKLYQRLRLLIPSkY---LMGKRSISDHLEEIVDYVKDL 139
677889**********************77...9******************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 260 aa
Download sequence Send
to blast |
MDDSEFDFGQ LDQLFNFLSS PSPPPPPPTT LQSYQDSSFS LQKQNSNIVF TSTHNVPKKK 60
PILITNINII DDQVIQDLPK EKEMVVEKKV MRRDVERQRR RDMAKLYQRL RLLIPSKYLM 120
GKRSISDHLE EIVDYVKDLK KDIEELESKR EKLKEMKNIT NISSPLAPNS SSMKLNDDDD 180
EDKIIVKSCN EGVEISIKGV LSISKVLKVL MKEGFIVNSC VSSTINQRLI HIIQTKVNKR 240
GDIDLALLRS KLMGKKSYI*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975519 | 0.0 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
