PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim07g062200.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 260aa MW: 29734.5 Da PI: 9.6363 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.4 | 1.6e-10 | 89 | 139 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +++ +Er+RR+++ + +++Lr l+P+ +K s ++ Le+ v+Y+k+L Sopim07g062200.0.1 89 KVMRRDVERQRRRDMAKLYQRLRLLIPSkY---LMGKRSISDHLEEIVDYVKDL 139 677889**********************77...9******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.417 | 87 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-10 | 87 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-7 | 89 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-7 | 89 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDDSEFDFGQ LDQLFNFLSS PSPPPPPPTT LQSYQDSSFS LQKQNSNIVF TSTHNVPKKK 60 PILITNINII DDQVIQDLPK EKEMVVEKKV MRRDVERQRR RDMAKLYQRL RLLIPSKYLM 120 GKRSISDHLE EIVDYVKDLK KDIEELESKR EKLKEMKNIT NISSPLAPNS SSMKLNDDDD 180 EDKIIVKSCN EGVEISIKGV LSISKVLKVL MKEGFIVNSC VSSTINQRLI HIIQTKVNKR 240 GDIDLALLRS KLMGKKSYI* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975519 | 0.0 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004244378.1 | 0.0 | transcription factor bHLH120-like | ||||
TrEMBL | A0A3Q7HGH9 | 0.0 | A0A3Q7HGH9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g062200.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12831 | 11 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25410.1 | 1e-15 | bHLH family protein |