PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g055710.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 389aa    MW: 44375.1 Da    PI: 6.5176
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g055710.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.55.1e-34161062101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+ye+++d+ ++ ++sws+ng+sfvv+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+++
  Sopim07g055710.0.1  16 FLLKTYELVDDSYTNPVVSWSHNGRSFVVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEDFLRGRRH 97 
                         9***************************************************************9998.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll++i r+k
  Sopim07g055710.0.1  98 LLKNIYRRK 106
                         *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.7E-388100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.67E-3511105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.6E-5912105IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDNCNGGSSS SSPAPFLLKT YELVDDSYTN PVVSWSHNGR SFVVWNPPEF ARDLLPKYFK  60
HNNFSSFIRQ LNTYGFRKVD PEQWEFANED FLRGRRHLLK NIYRRKPIHS HSAAAGTGQS  120
VAPLTDSERQ EYEDEIERLK RENSLLQSSA ENQLKFNGEY ESGIKSMEQR LQNVAHRQGK  180
LISLLAQLLQ TPGFSSDFTQ SASRKRRLLI SNYLIDEENS PKFDLEMVKK LDSSINFWER  240
FLYGVQTQDF EHTHSPIVTH TSSNDSAKRN SPIDHSPSSS ELGPLNPVMS STYENLERQL  300
KPSDNQIECK TSKTSELVSN SGNDVFWQQF LTETPGCTEP QQVENKGINE STRDIRLGDS  360
HRYWWNRGVN LENLAERMGH LSSPATGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-23610519129Heat shock factor protein 1
5d5v_B5e-23610519129Heat shock factor protein 1
5d5v_D5e-23610519129Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243245.10.0heat stress transcription factor A-4c
TrEMBLA0A3Q7HDC10.0A0A3Q7HDC1_SOLLC; Uncharacterized protein
STRINGSolyc07g055710.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84352329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.12e-85HSF family protein