PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g053680.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 180aa    MW: 20860.2 Da    PI: 4.8694
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g053680.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.31.3e-1499242128
                 NAM  42 vePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                          +Pw++ +   a++   yf ++++k  ++++r +r++ +g+Wk +gk kev+++kg+l+   k+L +  g +++k  + +W+m ey l
  Sopim07g053680.0.1   9 NDPWQIFEG--AKSYTRYFITPQKK--QNSQRVSRTVGKGTWKPQGKGKEVFDNKGRLIKYVKSLKYTYGkSDNKNANGEWLMTEYYL 92 
                         589999522..23335577776655..4679************************************866366777899*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.0631115IPR003441NAC domain
SuperFamilySSF1019413.27E-189115IPR003441NAC domain
PfamPF023651.7E-61091IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MVTNLYADND PWQIFEGAKS YTRYFITPQK KQNSQRVSRT VGKGTWKPQG KGKEVFDNKG  60
RLIKYVKSLK YTYGKSDNKN ANGEWLMTEY YLNDGYLDAR EIKNKDYVIC KIKKKRNPND  120
NENRVSNENM NDVEELIDSS LQLEDDINVE EDDVGNEVLT ILDKEDHGDP NVECLKEYP*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348969.11e-103PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A3Q7HCG41e-127A0A3Q7HCG4_SOLLC; Uncharacterized protein
STRINGSolyc07g053680.1.11e-128(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01540.12e-10NAC with transmembrane motif1