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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim07g053590.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 272aa MW: 30783.2 Da PI: 9.7837 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107 | 2.3e-33 | 40 | 180 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 lp+G++F+P+d+e++ e+L++kv+ + + + +++ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ Sopim07g053590.0.1 40 LPAGVKFDPSDQEIL-EHLEAKVRLDAhklhplI---DefiqTLEGEnGICYTHPEKLP-GVAKDGLVRHFFHRPSKAYTTGTRKRRKVHt 125 799***********9.99****999884554332...122222333336**********.555556788******************7444 PP NAM 80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v+ k++++g kk+Lv+y g+++k+ekt+Wvmh+y+l Sopim07g053590.0.1 126 diqgnETRWHKTGKTRPVVL-KNKVKGHKKILVLYtnYGKQRKPEKTNWVMHQYHL 180 45455888************.8899**********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.63E-38 | 35 | 199 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.38 | 40 | 199 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-15 | 41 | 180 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MTCINIDSLT SVTKIIRTCP SCGHLIKYEE KAGIHNLPGL PAGVKFDPSD QEILEHLEAK 60 VRLDAHKLHP LIDEFIQTLE GENGICYTHP EKLPGVAKDG LVRHFFHRPS KAYTTGTRKR 120 RKVHTDIQGN ETRWHKTGKT RPVVLKNKVK GHKKILVLYT NYGKQRKPEK TNWVMHQYHL 180 GDNEDEKEGE LVVSKVFYQT QPRQCGGVNN NIKNNSCPPP LPQVRTSQVG SQFVQCFNPT 240 TLISFERNNP TMTTTSRLPN FNNLPDASFI P* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00459 | DAP | Transfer from AT4G28500 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210360 | 0.0 | AC210360.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 7 clone C07HBa0184G23, complete sequence. | |||
GenBank | HG975519 | 0.0 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004243384.1 | 0.0 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-117 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A3Q7HF60 | 0.0 | A0A3Q7HF60_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g053590.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2875 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-120 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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