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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sopim07g053590.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
NAC |
| Protein Properties |
Length: 272aa MW: 30783.2 Da PI: 9.7837 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim07g053590.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 107 | 2.3e-33 | 40 | 180 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79
lp+G++F+P+d+e++ e+L++kv+ + + + +++ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++
Sopim07g053590.0.1 40 LPAGVKFDPSDQEIL-EHLEAKVRLDAhklhplI---DefiqTLEGEnGICYTHPEKLP-GVAKDGLVRHFFHRPSKAYTTGTRKRRKVHt 125
799***********9.99****999884554332...122222333336**********.555556788******************7444 PP
NAM 80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
+ +W++tgk+++v+ k++++g kk+Lv+y g+++k+ekt+Wvmh+y+l
Sopim07g053590.0.1 126 diqgnETRWHKTGKTRPVVL-KNKVKGHKKILVLYtnYGKQRKPEKTNWVMHQYHL 180
45455888************.8899**********6657999999*********98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 272 aa
Download sequence Send
to blast |
MTCINIDSLT SVTKIIRTCP SCGHLIKYEE KAGIHNLPGL PAGVKFDPSD QEILEHLEAK 60
VRLDAHKLHP LIDEFIQTLE GENGICYTHP EKLPGVAKDG LVRHFFHRPS KAYTTGTRKR 120
RKVHTDIQGN ETRWHKTGKT RPVVLKNKVK GHKKILVLYT NYGKQRKPEK TNWVMHQYHL 180
GDNEDEKEGE LVVSKVFYQT QPRQCGGVNN NIKNNSCPPP LPQVRTSQVG SQFVQCFNPT 240
TLISFERNNP TMTTTSRLPN FNNLPDASFI P*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC210360 | 0.0 | AC210360.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 7 clone C07HBa0184G23, complete sequence. |
| GenBank | HG975519 | 0.0 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
