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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim07g047960.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 414aa MW: 45204.8 Da PI: 7.6279 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim07g047960.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 93.3 | 1.9e-29 | 138 | 195 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
+DgynWrKYGqK v+g+ef+rsYY+Ct +C +kk+vers+ d+++++i+Y +H+h+k
Sopim07g047960.0.1 138 EDGYNWRKYGQKLVRGNEFTRSYYKCTRLNCLAKKQVERSQ-DGHITNIHYIATHEHPK 195
7****************************************.***************85 PP
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2 | WRKY | 103.7 | 9.8e-33 | 314 | 372 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
++Dgy+WrKYGqK vkg+++prsYYrC+sagCp+kk+vers+++pk v+++Yeg+H+h+
Sopim07g047960.0.1 314 VNDGYRWRKYGQKFVKGNPNPRSYYRCSSAGCPAKKHVERSSHNPKSVITVYEGQHDHD 372
58********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 414 aa
Download sequence Send
to blast |
MSQSNQKDSS LSNVPEKDAE NVHQKKGLES EGGASESSRV SVLPKKEPYI ISCKSDSPVK 60 DGNISLVPGK ASDSSQQIQS QKMEEVVSQP HQEQVTSSPM AENALCKLQS RRNPDTSVQD 120 LPSDQGVTPF SEPEKPSEDG YNWRKYGQKL VRGNEFTRSY YKCTRLNCLA KKQVERSQDG 180 HITNIHYIAT HEHPKPLSSP QISPELVVPS ETRRPDMSTG TPHEGEKSTA LGEACQSIVP 240 SESLSSATVV SAGGSSQDTV LKPLKPGDEG DNNGGRNSKR RKKEVPTSDD MTPPMKSPSE 300 SRHIVQTSSE VDVVNDGYRW RKYGQKFVKG NPNPRSYYRC SSAGCPAKKH VERSSHNPKS 360 VITVYEGQHD HDIPPSRTVI QNTAEADSNT TRISGESTSE SGENKHVVHI GAS*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975519 | 0.0 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |