PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sopim07g043260.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 822aa MW: 93689.5 Da PI: 7.8571

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim07g043260.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.9	1.2e-21	76	157	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+eYA++vGF +++++s++sk++g++++ + Cs+ g+++e+ ++ r+ +t+Cka++++k+++dgkw ++++ +eHnHe++ Sopim07g043260.0.1 76 YYREYARSVGFGITIKASRRSKKSGKFIDVKIACSRFGTKRESGSS-------RSCPKTDCKASIHLKRKQDGKWFIHSFMKEHNHEIC 157 8*************************************999877.......9999****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-19	76	157	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.0E-27	240	333	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.606	520	556	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.6E-7	527	554	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-5	531	558	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 822 aa Download sequence Send to blast
MEIDLRLSSG QDKRLDVYVD TNAIDDSIPS HVGKENVDGN GIGMDIVDVD IIDNGIENGE 60 PEKGIEFDTK EAAYAYYREY ARSVGFGITI KASRRSKKSG KFIDVKIACS RFGTKRESGS 120 SRSCPKTDCK ASIHLKRKQD GKWFIHSFMK EHNHEICQDD FYYSVKGRSK KSAGVVYQKK 180 GLQLALDEGD VELLLDTLAL MQAERPNSYY AIDFDKEKRM RNVFWIDAKG RNDYVHFCDV 240 IYLDTYYIRN KYKVPFLPIV GVNHHFQFLL LGCALVGDES SSTFNWLMST WLRAVGGQSP 300 RVVITDDEIS LKEAAEEVFP KAQHCFCLWN VMRKVSQNLV DKITKPEAFV KKLKKCMWFL 360 LKEEEFEKRW WKMVDSFKLR DDDLIRSLFE NRTKWVPVYM RNTFLAGLST FERSESVSSF 420 FERYISSETT FKEFIDQYKL FVHEMYEEEA KADIETRHRL PTIKTLSPYE KQMSTVYTNA 480 VFMKFQAEVF GVAACTILNE GEEGTEKLYR VNDREKHQSF MVSWCARESC IVCSCHFFEY 540 AGILCRHAIT VLQVSGVPNI PALYKLERWT REAKTKGRAC GIPSNPHHRI QRLNDLCKLA 600 AKFGEIGSLS WETYELAVNT LQAALHDCVN ANNSVKSALV SNISFSQCDP NFNEEIQGGN 660 MAKSSKRKKV QKMHKVQSDV EVLSTRIQDS SLQMDQSNSK LPTHEDAFLA QRHVQGMDLS 720 SRMATIAGYY APPHQSVHGL GKLSSFSMLQ DRYCSNHQAS QSVLGNLNYI SAHSGHYSPQ 780 SIQGLGQLSV RAPLVLPSFN IQENSSDMDN STSVTGKHLQ Y*

Sequence ? help Back to Top

Protein Sequence Length: 822 aa Download sequence Send to blast

MEIDLRLSSG QDKRLDVYVD TNAIDDSIPS HVGKENVDGN GIGMDIVDVD IIDNGIENGE  60
PEKGIEFDTK EAAYAYYREY ARSVGFGITI KASRRSKKSG KFIDVKIACS RFGTKRESGS  120
SRSCPKTDCK ASIHLKRKQD GKWFIHSFMK EHNHEICQDD FYYSVKGRSK KSAGVVYQKK  180
GLQLALDEGD VELLLDTLAL MQAERPNSYY AIDFDKEKRM RNVFWIDAKG RNDYVHFCDV  240
IYLDTYYIRN KYKVPFLPIV GVNHHFQFLL LGCALVGDES SSTFNWLMST WLRAVGGQSP  300
RVVITDDEIS LKEAAEEVFP KAQHCFCLWN VMRKVSQNLV DKITKPEAFV KKLKKCMWFL  360
LKEEEFEKRW WKMVDSFKLR DDDLIRSLFE NRTKWVPVYM RNTFLAGLST FERSESVSSF  420
FERYISSETT FKEFIDQYKL FVHEMYEEEA KADIETRHRL PTIKTLSPYE KQMSTVYTNA  480
VFMKFQAEVF GVAACTILNE GEEGTEKLYR VNDREKHQSF MVSWCARESC IVCSCHFFEY  540
AGILCRHAIT VLQVSGVPNI PALYKLERWT REAKTKGRAC GIPSNPHHRI QRLNDLCKLA  600
AKFGEIGSLS WETYELAVNT LQAALHDCVN ANNSVKSALV SNISFSQCDP NFNEEIQGGN  660
MAKSSKRKKV QKMHKVQSDV EVLSTRIQDS SLQMDQSNSK LPTHEDAFLA QRHVQGMDLS  720
SRMATIAGYY APPHQSVHGL GKLSSFSMLQ DRYCSNHQAS QSVLGNLNYI SAHSGHYSPQ  780
SIQGLGQLSV RAPLVLPSFN IQENSSDMDN STSVTGKHLQ Y*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC253606	0.0	AC253606.5 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-18e18 map 7, complete sequence.
GenBank	AC253643	0.0	AC253643.6 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-22m17 map 7, complete sequence.
GenBank	AC253675	0.0	AC253675.4 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-42o4 map 7, complete sequence.
GenBank	HG975519	0.0	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004243647.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X2
TrEMBL	A0A3Q7HCC9	0.0	A0A3Q7HCC9_SOLLC; Uncharacterized protein
STRING	Solyc07g043260.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	0.0	FAR1-related sequence 2