PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim07g017470.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 97aa MW: 10704.1 Da PI: 4.4693 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.3 | 1.3e-13 | 15 | 73 | 40 | 98 |
ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS B3 40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 + g++W++ + + + +y +++GWk+F+++n+LkegD +vF+l+ + ++ e++++++r Sopim07g017470.0.1 15 SYGGKKWNLIY--GGAKTKYKFSTGWKNFADDNNLKEGDGLVFELSeCNsDKIEFKIQILR 73 5679*******..9******************************98655566677777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.747 | 1 | 75 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.81E-14 | 13 | 73 | No hit | No description |
SuperFamily | SSF101936 | 2.16E-13 | 13 | 73 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.8E-11 | 14 | 71 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-12 | 16 | 74 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MSKELPFAGA PAVLSYGGKK WNLIYGGAKT KYKFSTGWKN FADDNNLKEG DGLVFELSEC 60 NSDKIEFKIQ ILREDFPAEL VPDVEGMNTN NPIIID* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975519 | 1e-159 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019070339.1 | 3e-64 | B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A3Q7H5F2 | 1e-62 | A0A3Q7H5F2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g017470.1.1 | 2e-63 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1819 | 21 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-08 | B3 family protein |