![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim07g017310.0.1 |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
G2-like |
Protein Properties |
Length: 365aa MW: 40999.2 Da PI: 4.6637 |
Description |
G2-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim07g017310.0.1 | genome | CSHL | View CDS |
|
Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Spi&pid=Sopim07g017310.0.1) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | G2-like | 32.6 | 1.7e-10 | 52 | 80 | 27 | 55 |
G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55
A Pk++ elm+++ L+ +++ SHLQkYRl
Sopim07g017310.0.1 52 ACPKKVHELMNMPELSKKQISSHLQKYRL 80
89**************************8 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 365 aa
Download sequence Send
to blast |
MKVNSIEVAL GGLRSSGLSF DLLLTDIHML KMDVFQFQQD IAKEFDISIC YACPKKVHEL 60 MNMPELSKKQ ISSHLQKYRL TLDKKPNPKV VFDSSKTTSG NANQLSITTD NISVLAPQVM 120 TKNLNNVGPD TELDLRNFMS YYEKDRNFSN ILSRHLNQKP YKMQGNHEGI NADGISLQLG 180 NVLQNSNLEQ GKYASITAEE RPLHSSTVSP NLSLQQEIYG GVTAEDALFD HLDVPSNSEI 240 RSGDYESFIA EDWLFLNSLF LDHELEQANY EGLTTKEGSL QLCNDPPNTT LEDLAPDEYN 300 IECANGFWDN AKVVQIGVGR KSMMCAQPKE KFDFVWNFLL PNSAMMKRIG RGLFQNMEDG 360 FDGE*
|
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC253659 | 1e-145 | AC253659.8 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-33k4 map 7, complete sequence. |
GenBank | AC253666 | 1e-145 | AC253666.5 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-48d7 map 7, complete sequence. |
GenBank | AC253989 | 1e-145 | AC253989.6 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-46l4 map 7, complete sequence. |
GenBank | HG975519 | 1e-145 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |