PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g008730.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HB-PHD
Protein Properties Length: 708aa    MW: 80117.2 Da    PI: 7.712
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g008730.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.54.6e-13491535953
                         HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
            Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                         ++ +eeL ++F++n  ps+e re L+kklg++ ++V  WF+N R+
  Sopim07g008730.0.1 491 PDAVEELRRVFAENELPSREVRENLSKKLGIEYEKVNKWFKNARY 535
                         6889****************************************8 PP
2PHD33.97.2e-12219274151
                         SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                 PHD   1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                         +C+ C+ +++  +++++lCd +C+ +fH++Cl+++l+++++p +   w+C+ Ck+k
  Sopim07g008730.0.1 219 ICAKCKLQEAfpDNDIILCDgTCNCAFHQECLDPPLSTDNIPPDdeGWFCKFCKCK 274
                         588898844445********56*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.32E-14210277IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.0E-11215275IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.202217274IPR019787Zinc finger, PHD-finger
SMARTSM002492.4E-9219272IPR001965Zinc finger, PHD-type
PfamPF006286.3E-9219274IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590220271IPR019786Zinc finger, PHD-type, conserved site
CDDcd155047.69E-28220271No hitNo description
Gene3DG3DSA:1.10.10.601.3E-12477534IPR009057Homeodomain-like
SuperFamilySSF466892.48E-11479542IPR009057Homeodomain-like
PROSITE profilePS5007112.94480540IPR001356Homeobox domain
SMARTSM003891.2E-11482544IPR001356Homeobox domain
CDDcd000861.14E-9483535No hitNo description
PfamPF000461.6E-10491535IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MPGKTDKDMH KAVASSSQVK NVLRRLEKKR SRLKSKSHGR STRASSSKRR VAGDGKVKCC  60
SGENILKNEI LKQAKSSKKQ SVLSCEAEKL QACNSKDNLK HDNLDTGSEK LKRRRKRRRR  120
KHNADPDDVS RLQRRTRYLL IKMKLEQNLI DAYSAEGWKG QSREKIRPER ELQRAKKQIL  180
NCKLGIREIV HRLDLLSSAG QIDDSAISPN GSVHHEHIIC AKCKLQEAFP DNDIILCDGT  240
CNCAFHQECL DPPLSTDNIP PDDEGWFCKF CKCKMEIIEA TNAHIGTHFA MDSNWENIFK  300
EEALLPEGEE SLLCPEQDWP SDDSEDDDYD PEKVANSHNS TDSFESGSSS EASSGSMLGS  360
LEDELLALTG KPEDGSGGKD YLSEHIAVSD YEETTDFEVL SGPRQRKAVD YIKLNDEMFG  420
KHAPVIEQNS EDEDWGPGKR KRRRKEPESD AASTLITLFE SERSCPEKKV NEVEKESFGR  480
PAKREIFRIP PDAVEELRRV FAENELPSRE VRENLSKKLG IEYEKVNKWF KNARYTALKA  540
RKVEGTKPCQ ATSPTTSVGC TPETVKGEPA DHISSSDAEE NAAQAPNEET SNLVIRPSKK  600
KHDKKAVITS IDRVETLVES GDDVSLKLLR DRAKKQRRKL ISKEREKIQE AEAEAEMQEL  660
CRIKDKIARL QDILRRFPNH RCRRADTSSL DESLIVFVPV AQLQEKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120RRRKRRRRK
2438443KRKRRR
3438444KRKRRRK
4439443RKRRR
5439445RKRRRKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242815.10.0pathogenesis-related homeodomain protein isoform X2
SwissprotP487851e-144PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A3Q7H4G00.0A0A3Q7H4G0_SOLLC; Uncharacterized protein
STRINGSolyc07g008730.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106842123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-94pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]