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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim07g007120.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TALE | ||||||||
Protein Properties | Length: 432aa MW: 48015.7 Da PI: 5.9628 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.4 | 1e-07 | 374 | 407 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Sopim07g007120.0.1 374 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 407 469*****************************87 PP | |||||||
2 | ELK | 28.8 | 2.8e-10 | 328 | 349 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ Sopim07g007120.0.1 328 ELKHELKQGYKEKIVDIREEIL 349 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.1E-19 | 162 | 206 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.9E-17 | 164 | 205 | IPR005540 | KNOX1 |
SMART | SM01256 | 6.4E-25 | 215 | 271 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.3E-18 | 221 | 270 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.969 | 328 | 348 | IPR005539 | ELK domain |
SMART | SM01188 | 6.1E-4 | 328 | 349 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.0E-6 | 328 | 349 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 348 | 411 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-11 | 350 | 415 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-16 | 350 | 414 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.41E-11 | 351 | 412 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-25 | 355 | 412 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.2E-17 | 368 | 407 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MEFQDHFSQE MVLHQQQQQQ QQQQNAVLRS MLPESPHHDA RKSPPTWLNT SLLRQQHSQF 60 GNASSPSSAA AAAAVAGGNN FLHLQTSNSD SSNSNQWLSP TAAAGGGGNG GGGGHNDELS 120 ESMNFAKKMS QQHSGGGEEN NNNNNNNNNN NNNEEENSWE REKCKADILN HPLYDQLLSA 180 HVSCLRIATP VDQLPRIDAQ LAQSQNVVAK YSVLGQGQPP LDDKDLDQFM THYVLLLSSF 240 KEQLQQHVRV HAMEAVMACW ELEQSLQSLT GVAPGEGTGA TMSDDDDDQA DSDTNFLDGG 300 FDGPDSMGFG PLVPTESERS LMERVRQELK HELKQGYKEK IVDIREEILR KRRAGKLPGD 360 TTSVLKAWWQ SHSKWPYPTE EDKARLVQET GLQLKQINNW FINQRKRNWH SNPSTSSSQK 420 SKRKSAGEIK Q* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May have a role to play in formative events in ovule and embryo morphogenesis. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014214 | 0.0 | BT014214.1 Lycopersicon esculentum clone 133392F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001233945.2 | 0.0 | homeobox protein knotted-1-like LET12 | ||||
Swissprot | O22300 | 0.0 | LET12_SOLLC; Homeobox protein knotted-1-like LET12 | ||||
TrEMBL | A0A3Q7H6U7 | 0.0 | A0A3Q7H6U7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g007120.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1432 | 24 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-151 | KNOTTED1-like homeobox gene 3 |