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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim07g006840.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 484aa MW: 55483.4 Da PI: 4.7773 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 132.9 | 2.2e-41 | 56 | 184 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 ppGfrFhPtd el+++yL++k+++ +l+ + i e++iyk+eP ++ + k +++e+ wy F++rd+ky++g+r+ r t +gyWkatg dk Sopim07g006840.0.1 56 PPGFRFHPTDYELIKHYLERKLANLPLHP-NKIYELNIYKYEPDTIAAqlKPTTTENIWYVFTPRDRKYPNGERPDRCTWNGYWKATGIDK 145 9*************************999.77**************8523445577799******************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ + +++g ++ Lv+y g+ p+g+ktdW+mhey + Sopim07g006840.0.1 146 IIVDDdNISKIGSRRALVYYIGKPPNGKKTDWIMHEYMI 184 ***9856677***************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00018 | 0 | 36 | 48 | IPR018247 | EF-Hand 1, calcium-binding site |
SuperFamily | SSF101941 | 9.02E-48 | 48 | 210 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.638 | 55 | 211 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-22 | 56 | 183 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MENHNTSLTN NESKDNLISA NHINELPISA VFSNKDSNGD QIMSPEDVEA LMNKFPPGFR 60 FHPTDYELIK HYLERKLANL PLHPNKIYEL NIYKYEPDTI AAQLKPTTTE NIWYVFTPRD 120 RKYPNGERPD RCTWNGYWKA TGIDKIIVDD DNISKIGSRR ALVYYIGKPP NGKKTDWIMH 180 EYMIPKITIP NSSTPRNPKL DEWVLCKFYN RNDVITSGST RRKRKRGDHD PIIDEVHQDS 240 VRNSFTNFNN NDNHAVMLSE GTSLGNDPTS YFNYNYNHAT MFFQGTDQDS MRKDHTNYDN 300 NYNHAMTLHP QVHMEVPTLP QCPNMPFLSN YQNYVSDHFN DYSIVDPPLP LRIEPTPTNN 360 SIEHDYTMNN VGVGGDYGEY SEVHDQYYVS DQYIVDNYES QYDTNNFVNG ETTTSNNFVN 420 GETTTSNNFV NGETTTTSNN FVNGETTNSN NFANGETTNS DNYETNTSNN FVNGETSTSK 480 EDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-45 | 55 | 212 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-45 | 55 | 212 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-45 | 55 | 212 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-45 | 55 | 212 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-45 | 55 | 212 | 20 | 169 | NAC domain-containing protein 19 |
3swm_B | 6e-45 | 55 | 212 | 20 | 169 | NAC domain-containing protein 19 |
3swm_C | 6e-45 | 55 | 212 | 20 | 169 | NAC domain-containing protein 19 |
3swm_D | 6e-45 | 55 | 212 | 20 | 169 | NAC domain-containing protein 19 |
3swp_A | 6e-45 | 55 | 212 | 20 | 169 | NAC domain-containing protein 19 |
3swp_B | 6e-45 | 55 | 212 | 20 | 169 | NAC domain-containing protein 19 |
3swp_C | 6e-45 | 55 | 212 | 20 | 169 | NAC domain-containing protein 19 |
3swp_D | 6e-45 | 55 | 212 | 20 | 169 | NAC domain-containing protein 19 |
4dul_A | 4e-45 | 55 | 212 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 4e-45 | 55 | 212 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 220 | 225 | RRKRKR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC087773 | 0.0 | AC087773.1 Genomic Sequence For Lycopersicon esculentum Clone T62O11, complete sequence. | |||
GenBank | AF411808 | 0.0 | AF411808.1 Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence. | |||
GenBank | HG975519 | 0.0 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010323471.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3-like | ||||
TrEMBL | K4CBF5 | 0.0 | K4CBF5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g006840.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13936 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 4e-49 | NAC domain containing protein 25 |