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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim07g005650.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 514aa MW: 56293.5 Da PI: 6.8599 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim07g005650.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 79.5 | 3.7e-25 | 203 | 259 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
+DgynWrKYGqK+vk+ + +rsYYrCt+++C++kk +e+s++ ++v+ei+Y+ +Hnh+
Sopim07g005650.0.1 203 RDGYNWRKYGQKQVKSPQGSRSYYRCTHSECCAKK-IECSDHTNRVMEIIYRTQHNHD 259
7********************************98.*********************7 PP
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2 | WRKY | 95.5 | 3.6e-30 | 375 | 432 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
+Dgy+WrKYGqK vkg+++pr+YYrCtsagCpv+k++er + +++++itY+g H+h+
Sopim07g005650.0.1 375 SDGYRWRKYGQKIVKGNPHPRNYYRCTSAGCPVRKHIERVLDTTSALTITYKGVHDHD 432
7********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 514 aa
Download sequence Send
to blast |
MDDENESSKS AGLKNSNLEE EEEDKISNKI ENSSVHNDEN GDDDRVIDGS SGAESLRESK 60 TGALISETLA HPNAESSVQI EIDGQSEFDS EFSPSYQLSE VPVEYELPSF GFSEKIKDRI 120 SVTKPGTLNA QARTEHQRRV PDAASSLELS SLSVAQSISS VPSATLAERR SAAAVNCSTG 180 EVVKQSSDAQ VLALVPVLKR PTRDGYNWRK YGQKQVKSPQ GSRSYYRCTH SECCAKKIEC 240 SDHTNRVMEI IYRTQHNHDP PPRVNCPRES KSALLSSPTN GKSIIAHPRR NSIETVVSPL 300 NENLQESLPI AETANQDSGG SDTDTEITIR EEHRDEAGQK KRSRKSDTSC LESVSKPGKK 360 PKLVVHAACD VGISSDGYRW RKYGQKIVKG NPHPRNYYRC TSAGCPVRKH IERVLDTTSA 420 LTITYKGVHD HDMPVPKKRH GPPSAPLIAA TAPASVTTMH ANKPEPLQHQ KSTTQWSVDK 480 EGELTGEKLD VGGEKAMESA RTLLSIGFEI KPC*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975519 | 0.0 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |