PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim07g005400.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 441aa MW: 45915.5 Da PI: 6.7258 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.9 | 3.2e-12 | 265 | 310 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Sopim07g005400.0.1 265 HSIAERLRRERIAERLKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 310 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.45E-13 | 258 | 314 | No hit | No description |
SuperFamily | SSF47459 | 6.02E-17 | 258 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.428 | 260 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-16 | 262 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-9 | 265 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-13 | 266 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MNSLLSQQQQ SQISLQDLQN GGNGGSTGGV GGLSQHSMGH SHFDPTSSHD DFLEQILSSV 60 PSSSPWPDLS KSWDPHHHLS SPPHNPSSGE DQPPSNPFHS QFHYDDQASS LLASKLRQHQ 120 ITSGGGAAAA AKALMLQQQL LLSRTLAGNG LRSPNGASGD NGLLSLPLNL SNGDQNDGVA 180 NPTNDNSVQA LFNGFTGSLG QTSNQPQHFH HPQGGSMQSQ SFGAPAMNQT PAASGSAGGG 240 GGSTPAAQPK QQRVRARRGQ ATDPHSIAER LRRERIAERL KALQELVPNA NKTDKASMLD 300 EIIDYVKFLQ LQVKVLSMSR LGGAPLVADM SSEGRGEGNV GRGGNGRASS SSNNETMTVT 360 EHQVAKLMEE DMGSAMQYLQ GKGLCLMPIS LATAISTSTT RISNNPLLAP EAGGSTSPTL 420 SALTVQSATA GKDATSLSET * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 269 | 274 | RLRRER |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975519 | 0.0 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004242577.1 | 0.0 | transcription factor bHLH82-like | ||||
Refseq | XP_025887621.1 | 0.0 | transcription factor bHLH82-like | ||||
Swissprot | Q9ZUG9 | 2e-82 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | A0A3Q7H687 | 0.0 | A0A3Q7H687_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g005400.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3759 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 4e-51 | LJRHL1-like 1 |
Publications ? help Back to Top | |||
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