PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g083900.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 29491.7 Da PI: 4.9637 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 7.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd ll++++k+ G ++W++ ++ g+ R++k+c++rw +yl Sopim06g083900.0.1 14 RGPWSKEEDYLLINYIKKNGHPNWRALPKLAGLLRCGKSCRLRWTNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 43.6 | 6.6e-14 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T +E++ ++++++ lG+ W++Ia++++ gRt++++k+ w++ Sopim06g083900.0.1 67 RGNFTHQEEDTIIKLHQVLGNS-WSAIAARLP-GRTDNEIKNIWHT 110 89******************99.*********.*********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.745 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.43E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 22.934 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-13 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.51E-7 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MGRSPCCEKL GLKRGPWSKE EDYLLINYIK KNGHPNWRAL PKLAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF THQEEDTIIK LHQVLGNSWS AIAARLPGRT DNEIKNIWHT RLKKKRNESQ 120 LKETQSEPEN TNVDVHLEEA NNSNDKHSEI SNLKINIEIQ QQPSPSSSVS SSSEDSCSNT 180 TATSSESRNQ IMSDNLLEID DDIWSEVVWA QVDDNYVDLS LMEDNYHINS SFDDNWFWDD 240 LFTRSNELML ELPEL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 12 | 115 | 5 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269|PubMed:16861809, ECO:0000269|PubMed:9681014}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269|PubMed:9681014}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004242359.1 | 0.0 | transcription factor MYB13-like | ||||
Swissprot | Q9LNC9 | 6e-73 | MYB13_ARATH; Transcription factor MYB13 | ||||
TrEMBL | A0A3Q7H5K6 | 0.0 | A0A3Q7H5K6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g083900.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06180.1 | 1e-72 | myb domain protein 13 |
Publications ? help Back to Top | |||
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