PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g083850.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 171aa    MW: 20005.5 Da    PI: 5.7703
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g083850.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM35.62.8e-11128102129
                 NAM 102 lkktLvfykgrapkgektdWvmheyrle 129
                         ++ktLvfyk+rap+g ktdW+mhe+rle
  Sopim06g083850.0.1   1 MRKTLVFYKNRAPNGIKTDWIMHEFRLE 28 
                         89***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.217146IPR003441NAC domain
SuperFamilySSF1019411.96E-16147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MRKTLVFYKN RAPNGIKTDW IMHEFRLEIP HIPLKEDWVL CRVFYKNKGE NNNNCTNKLS  60
SQNKCEAIVT SSNVSQSPIY MNQHSLNCDI KYQNSPHQII QNSNIIHHHL FDLLVKDHLE  120
TTRLTECSQE DDQYGLLFDM NFEESYVQDE QIHSSLEGMR FDDENSAVLI *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242365.11e-124protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A3Q7H1Y91e-122A0A3Q7H1Y9_SOLLC; Uncharacterized protein
STRINGSolyc06g083850.2.11e-125(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18822466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-23NAC domain containing protein 74